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2QQH
Asym. Unit
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Asym.Unit (56 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
STRUCTURE OF C8A-MACPF REVEALS MECHANISM OF MEMBRANE ATTACK IN COMPLEMENT IMMUNE DEFENSE
Authors
:
M. A. Hadders, P. Gros
Date
:
26 Jul 07 (Deposition) - 25 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Macpf, Membrane Perforation, Cleavage On Pair Of Basic Residues, Complement Alternate Pathway, Complement Pathway, Cytolysis, Egf-Like Domain, Glycoprotein, Immune Response, Innate Immunity, Membrane Attack Complex, Polymorphism, Secreted, Immune System, Membrane Protein
(Keyword Search:
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Reference
:
M. A. Hadders, D. X. Beringer, P. Gros
Structure Of C8Alpha-Macpf Reveals Mechanism Of Membrane Attack In Complement Immune Defense.
Science V. 317 1552 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
3a: (UNKa)
3b: (UNKb)
3c: (UNKc)
3d: (UNKd)
3e: (UNKe)
3f: (UNKf)
3g: (UNKg)
3h: (UNKh)
3i: (UNKi)
3j: (UNKj)
3k: (UNKk)
3l: (UNKl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NI
1
Ligand/Ion
NICKEL (II) ION
2
SO4
3
Ligand/Ion
SULFATE ION
3
UNK
12
Mod. Amino Acid
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:118 , SER A:119 , GLN A:120 , LYS A:121 , HOH A:515 , HOH A:531
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
ARG A:394
BINDING SITE FOR RESIDUE SO4 A 466
3
AC3
SOFTWARE
LYS A:275 , ARG A:439 , HIS A:440 , HOH A:542
BINDING SITE FOR RESIDUE SO4 A 467
4
AC4
SOFTWARE
HIS A:186 , GLU A:188 , HIS A:270 , HOH A:524 , HOH A:529
BINDING SITE FOR RESIDUE NI A 500
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033800 (D428N, chain A, )
2: VAR_011891 (R455L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033800
D
458
N
CO8A_HUMAN
Polymorphism
17114555
A
D
428
N
2
UniProt
VAR_011891
R
485
L
CO8A_HUMAN
Polymorphism
1620075
A
R
455
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: MACPF_2 (A:105-462)
2: MACPF_1 (A:300-311)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MACPF_2
PS51412
Membrane attack complex/perforin (MACPF) domain profile.
CO8A_HUMAN
135-498
1
A:105-462
2
MACPF_1
PS00279
Membrane attack complex/perforin (MACPF) domain signature.
CO8A_HUMAN
330-341
1
A:300-311
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Exons
(7, 7)
Info
All Exons
Exon 1.4 (A:102-125)
Exon 1.5 (A:125-188 (gaps))
Exon 1.6 (A:189-255)
Exon 1.7 (A:256-335)
Exon 1.8 (A:2-12)
Exon 1.9 (A:13-430 (gaps))
Exon 1.10 (A:431-463)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.11
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000361249
1
ENSE00001436108
chr1:
57320479-57320651
173
CO8A_HUMAN
1-26
26
0
-
-
1.2
ENST00000361249
2
ENSE00001390177
chr1:
57333282-57333375
94
CO8A_HUMAN
26-57
32
0
-
-
1.3
ENST00000361249
3
ENSE00001436153
chr1:
57340622-57340766
145
CO8A_HUMAN
58-106
49
0
-
-
1.4
ENST00000361249
4
ENSE00001030576
chr1:
57341735-57341882
148
CO8A_HUMAN
106-155
50
1
A:102-125
24
1.5
ENST00000361249
5
ENSE00001381670
chr1:
57347118-57347307
190
CO8A_HUMAN
155-218
64
1
A:125-188 (gaps)
64
1.6
ENST00000361249
6
ENSE00001030560
chr1:
57349154-57349354
201
CO8A_HUMAN
219-285
67
1
A:189-255
67
1.7
ENST00000361249
7
ENSE00001436552
chr1:
57351600-57351840
241
CO8A_HUMAN
286-366
81
1
A:256-335
80
1.8
ENST00000361249
8
ENSE00001382619
chr1:
57372340-57372465
126
CO8A_HUMAN
366-408
43
1
A:2-12
11
1.9
ENST00000361249
9
ENSE00001030541
chr1:
57373629-57373786
158
CO8A_HUMAN
408-460
53
1
A:13-430 (gaps)
52
1.10
ENST00000361249
10
ENSE00001436003
chr1:
57378076-57378298
223
CO8A_HUMAN
461-535
75
1
A:431-463
33
1.11
ENST00000361249
11
ENSE00001422483
chr1:
57383238-57383894
657
CO8A_HUMAN
535-584
50
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_MACPF_2qqhA01 (A:237-460)
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)
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)
Clan
:
CDC
(6)
Family
:
MACPF
(3)
Homo sapiens (Human)
(2)
1a
MACPF-2qqhA01
A:237-460
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Chain A
Asymmetric Unit 1
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Asym.Unit (56 KB)
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