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Biol. Unit 2
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Asym.Unit (227 KB)
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Biol.Unit 2 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IRON-SULFUR CLUSTER BIOSYNTHESIS PROTEIN ISCU (TTHA1736) FROM THERMUS THERMOPHILUS HB8
Authors
:
J. Jeyakanthan, S. P. Kanaujia, K. Sekar, Y. Agari, A. Ebihara, A. Shinkai, S. Kuramitsu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
26 Jul 07 (Deposition) - 29 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,F,H,I,J (1x)
Biol. Unit 2: B,C,D,E,G (1x)
Keywords
:
Iscu, Zinc Binding, Iron-Sulfur Cluster Binding, Three Conserved Cys, Three Beta Strands, Four Alapha Helixes, Metal Binding Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Jeyakanthan, S. P. Kanaujia, K. Sekar, Y. Agari, A. Ebihara, A. Shinkai, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Iron-Sulfur Cluster Biosynthesis Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
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Sites
(5, 5)
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1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
CYS B:39 , ASP B:41 , CYS B:64 , ARG B:122 , CYS B:125
BINDING SITE FOR RESIDUE ZN B 139
2
AC3
SOFTWARE
CYS C:39 , ASP C:41 , CYS C:64 , CYS C:125
BINDING SITE FOR RESIDUE ZN C 139
3
AC4
SOFTWARE
CYS D:39 , ASP D:41 , CYS D:64 , CYS D:125
BINDING SITE FOR RESIDUE ZN D 139
4
AC5
SOFTWARE
CYS E:39 , ASP E:41 , CYS E:64 , CYS E:125
BINDING SITE FOR RESIDUE ZN E 139
5
AC7
SOFTWARE
CYS G:39 , ASP G:41 , CYS G:64 , CYS G:125
BINDING SITE FOR RESIDUE ZN G 139
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SAPs(SNPs)/Variants
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SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2qq4a_ (A:)
1b: SCOP_d2qq4b_ (B:)
1c: SCOP_d2qq4c_ (C:)
1d: SCOP_d2qq4d_ (D:)
1e: SCOP_d2qq4e_ (E:)
1f: SCOP_d2qq4f_ (F:)
1g: SCOP_d2qq4g_ (G:)
1h: SCOP_d2qq4h_ (H:)
1i: SCOP_d2qq4i_ (I:)
1j: SCOP_d2qq4j_ (J:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SufE/NifU
(22)
Superfamily
:
SufE/NifU
(22)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Thermus thermophilus [TaxId: 274]
(1)
1a
d2qq4a_
A:
1b
d2qq4b_
B:
1c
d2qq4c_
C:
1d
d2qq4d_
D:
1e
d2qq4e_
E:
1f
d2qq4f_
F:
1g
d2qq4g_
G:
1h
d2qq4h_
H:
1i
d2qq4i_
I:
1j
d2qq4j_
J:
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CATH Domains
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Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_NifU_N_2qq4J01 (J:7-138)
1b: PFAM_NifU_N_2qq4J02 (J:7-138)
1c: PFAM_NifU_N_2qq4J03 (J:7-138)
1d: PFAM_NifU_N_2qq4J04 (J:7-138)
1e: PFAM_NifU_N_2qq4J05 (J:7-138)
1f: PFAM_NifU_N_2qq4J06 (J:7-138)
1g: PFAM_NifU_N_2qq4J07 (J:7-138)
1h: PFAM_NifU_N_2qq4J08 (J:7-138)
1i: PFAM_NifU_N_2qq4J09 (J:7-138)
1j: PFAM_NifU_N_2qq4J10 (J:7-138)
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Clan
:
SufE_NifU
(4)
Family
:
NifU_N
(2)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(1)
1a
NifU_N-2qq4J01
J:7-138
1b
NifU_N-2qq4J02
J:7-138
1c
NifU_N-2qq4J03
J:7-138
1d
NifU_N-2qq4J04
J:7-138
1e
NifU_N-2qq4J05
J:7-138
1f
NifU_N-2qq4J06
J:7-138
1g
NifU_N-2qq4J07
J:7-138
1h
NifU_N-2qq4J08
J:7-138
1i
NifU_N-2qq4J09
J:7-138
1j
NifU_N-2qq4J10
J:7-138
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Asym.Unit (227 KB)
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