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2QQ3
Asym. Unit
Info
Asym.Unit (520 KB)
Biol.Unit 1 (261 KB)
Biol.Unit 2 (261 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENOYL-COA HYDRATES SUBUNIT I (GK_2039) OTHER FORM FROM GEOBACILLUS KAUSTOPHILUS HTA426
Authors
:
J. Jeyakanthan, S. P. Kanaujia, K. Sekar, A. Ebihara, A. Shinkai, S. Kuramitsu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
26 Jul 07 (Deposition) - 29 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: B,C,D,G,H,K (1x)
Biol. Unit 2: A,E,F,I,J,L (1x)
Keywords
:
Hydratase, B-Oxidation, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Jeyakanthan, S. P. Kanaujia, K. Sekar, A. Ebihara, A. Shinkai, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) Other Form From Geobacillus Kaustophilus Hta426
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 13)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA D:66 , GLY D:109
BINDING SITE FOR RESIDUE EDO D 2001
02
AC2
SOFTWARE
GLY D:65 , ALA D:66 , ILE D:68 , LEU D:135
BINDING SITE FOR RESIDUE EDO D 2002
03
AC3
SOFTWARE
ALA C:66 , GLY C:109
BINDING SITE FOR RESIDUE EDO C 2003
04
AC4
SOFTWARE
GLY C:65 , ALA C:66 , ILE C:68 , PHE K:247
BINDING SITE FOR RESIDUE EDO C 2004
05
AC5
SOFTWARE
ALA J:66 , GLY J:109
BINDING SITE FOR RESIDUE EDO J 2005
06
AC6
SOFTWARE
PHE F:247 , GLY J:65 , ALA J:66 , ILE J:68
BINDING SITE FOR RESIDUE EDO J 2006
07
AC7
SOFTWARE
GLN A:173 , ARG E:155 , ARG L:155 , GLN L:173
BINDING SITE FOR RESIDUE EDO L 2007
08
AC8
SOFTWARE
PHE E:44 , ASP E:45 , ASN E:47 , GLU E:48 , THR E:96
BINDING SITE FOR RESIDUE EDO E 2008
09
AC9
SOFTWARE
GLY B:65 , ALA B:66 , GLY B:108 , GLY B:109 , PRO B:131 , GLU B:132
BINDING SITE FOR RESIDUE EDO B 2009
10
BC1
SOFTWARE
GLY F:65 , ALA F:66 , PRO F:131 , LEU F:135 , PHE I:247
BINDING SITE FOR RESIDUE EDO F 2010
11
BC2
SOFTWARE
ALA F:66 , GLY F:109
BINDING SITE FOR RESIDUE EDO F 2011
12
BC3
SOFTWARE
ALA E:66 , GLY E:109
BINDING SITE FOR RESIDUE EDO E 2012
13
BC4
SOFTWARE
PRO L:23 , ASP L:24 , LEU L:26
BINDING SITE FOR RESIDUE EDO L 2013
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2qq3a_ (A:)
1b: SCOP_d2qq3b_ (B:)
1c: SCOP_d2qq3k_ (K:)
1d: SCOP_d2qq3l_ (L:)
1e: SCOP_d2qq3c_ (C:)
1f: SCOP_d2qq3d_ (D:)
1g: SCOP_d2qq3e_ (E:)
1h: SCOP_d2qq3f_ (F:)
1i: SCOP_d2qq3g_ (G:)
1j: SCOP_d2qq3h_ (H:)
1k: SCOP_d2qq3i_ (I:)
1l: SCOP_d2qq3j_ (J:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
automated matches
(96)
Protein domain
:
automated matches
(96)
Geobacillus kaustophilus [TaxId: 1462]
(2)
1a
d2qq3a_
A:
1b
d2qq3b_
B:
1c
d2qq3k_
K:
1d
d2qq3l_
L:
1e
d2qq3c_
C:
1f
d2qq3d_
D:
1g
d2qq3e_
E:
1h
d2qq3f_
F:
1i
d2qq3g_
G:
1j
d2qq3h_
H:
1k
d2qq3i_
I:
1l
d2qq3j_
J:
[
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CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_2qq3C01 (C:2-200)
1b: CATH_2qq3K01 (K:2-200)
1c: CATH_2qq3G01 (G:4-200)
1d: CATH_2qq3H01 (H:4-200)
1e: CATH_2qq3L01 (L:2-200)
1f: CATH_2qq3I01 (I:3-200)
1g: CATH_2qq3J01 (J:3-200)
1h: CATH_2qq3A01 (A:4-200)
1i: CATH_2qq3B01 (B:4-200)
1j: CATH_2qq3D01 (D:4-200)
1k: CATH_2qq3E01 (E:4-200)
1l: CATH_2qq3F01 (F:4-200)
2a: CATH_2qq3A02 (A:201-257)
2b: CATH_2qq3B02 (B:201-257)
2c: CATH_2qq3K02 (K:201-257)
2d: CATH_2qq3L02 (L:201-257)
2e: CATH_2qq3C02 (C:201-257)
2f: CATH_2qq3D02 (D:201-257)
2g: CATH_2qq3E02 (E:201-257)
2h: CATH_2qq3F02 (F:201-257)
2i: CATH_2qq3G02 (G:201-257)
2j: CATH_2qq3H02 (H:201-257)
2k: CATH_2qq3I02 (I:201-257)
2l: CATH_2qq3J02 (J:201-257)
View:
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Classes
(
)
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)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Geobacillus kaustophilus. Organism_taxid: 1462. Strain: hta426.
(1)
1a
2qq3C01
C:2-200
1b
2qq3K01
K:2-200
1c
2qq3G01
G:4-200
1d
2qq3H01
H:4-200
1e
2qq3L01
L:2-200
1f
2qq3I01
I:3-200
1g
2qq3J01
J:3-200
1h
2qq3A01
A:4-200
1i
2qq3B01
B:4-200
1j
2qq3D01
D:4-200
1k
2qq3E01
E:4-200
1l
2qq3F01
F:4-200
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Geobacillus kaustophilus. Organism_taxid: 1462. Strain: hta426.
(1)
2a
2qq3A02
A:201-257
2b
2qq3B02
B:201-257
2c
2qq3K02
K:201-257
2d
2qq3L02
L:201-257
2e
2qq3C02
C:201-257
2f
2qq3D02
D:201-257
2g
2qq3E02
E:201-257
2h
2qq3F02
F:201-257
2i
2qq3G02
G:201-257
2j
2qq3H02
H:201-257
2k
2qq3I02
I:201-257
2l
2qq3J02
J:201-257
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_ECH_2qq3L01 (L:8-250)
1b: PFAM_ECH_2qq3L02 (L:8-250)
1c: PFAM_ECH_2qq3L03 (L:8-250)
1d: PFAM_ECH_2qq3L04 (L:8-250)
1e: PFAM_ECH_2qq3L05 (L:8-250)
1f: PFAM_ECH_2qq3L06 (L:8-250)
1g: PFAM_ECH_2qq3L07 (L:8-250)
1h: PFAM_ECH_2qq3L08 (L:8-250)
1i: PFAM_ECH_2qq3L09 (L:8-250)
1j: PFAM_ECH_2qq3L10 (L:8-250)
1k: PFAM_ECH_2qq3L11 (L:8-250)
1l: PFAM_ECH_2qq3L12 (L:8-250)
View:
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Clans
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)
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Geobacillus kaustophilus
(3)
1a
ECH-2qq3L01
L:8-250
1b
ECH-2qq3L02
L:8-250
1c
ECH-2qq3L03
L:8-250
1d
ECH-2qq3L04
L:8-250
1e
ECH-2qq3L05
L:8-250
1f
ECH-2qq3L06
L:8-250
1g
ECH-2qq3L07
L:8-250
1h
ECH-2qq3L08
L:8-250
1i
ECH-2qq3L09
L:8-250
1j
ECH-2qq3L10
L:8-250
1k
ECH-2qq3L11
L:8-250
1l
ECH-2qq3L12
L:8-250
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Asym.Unit (520 KB)
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