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2QO6
Asym. Unit
Info
Asym.Unit (28 KB)
Biol.Unit 1 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLYCINE 55 ARGININE MUTANT OF ZEBRAFISH LIVER BILE ACID-BINDING PROTEIN COMPLEXED WITH CHOLIC ACID
Authors
:
S. Capaldi, G. Saccomani, M. Perduca, H. L. Monaco
Date
:
20 Jul 07 (Deposition) - 31 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Liver Bile Acid-Binding Protein, Babp, Fatty Acid-Binding Protein, Fabp, Liver (Basic) Fatty Acid-Binding Protein, Cholic Acid, Cholate, Bile Acid, G55R Mutant, Lipid-Binding, Transport, Lipid Binding Protein
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Reference
:
S. Capaldi, M. Guariento, G. Saccomani, D. Fessas, M. Perduca, H. L. Monaco
A Single Amino Acid Mutation In Zebrafish (Danio Rerio) Liver Bile Acid-Binding Protein Can Change The Stoichiometr Of Ligand Binding.
J. Biol. Chem. V. 282 31008 2007
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CHOLIC ACID (CHDa)
2a: GLYCEROL (GOLa)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CHD
1
Ligand/Ion
CHOLIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
IPA
3
Ligand/Ion
ISOPROPYL ALCOHOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:14 , LYS A:56 , THR A:72 , MET A:73 , ASP A:74 , HIS A:98 , ARG A:120 , IPA A:140 , IPA A:141 , GOL A:145 , HOH A:146 , HOH A:147 , HOH A:148 , HOH A:149
BINDING SITE FOR RESIDUE CHD A 130
2
AC2
SOFTWARE
ILE A:70 , CYS A:91 , PHE A:96 , HIS A:98 , CHD A:130
BINDING SITE FOR RESIDUE IPA A 140
3
AC3
SOFTWARE
SER A:51 , HIS A:98 , CHD A:130 , IPA A:142 , HOH A:154
BINDING SITE FOR RESIDUE IPA A 141
4
AC4
SOFTWARE
ILE A:49 , PHE A:62 , ILE A:70 , GLN A:100 , IPA A:141
BINDING SITE FOR RESIDUE IPA A 142
5
AC5
SOFTWARE
LEU A:23 , THR A:72 , ASP A:74 , PHE A:96 , CHD A:130 , HOH A:185
BINDING SITE FOR RESIDUE GOL A 145
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FABP (A:4-21)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FABP
PS00214
Cytosolic fatty-acid binding proteins signature.
FA10A_DANRE
5-22
1
A:4-21
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:1-22)
Exon 1.2 (A:22-79)
Exon 1.3 (A:80-109)
Exon 1.4 (A:110-125)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSDART00000056095
1
ENSDARE00000410254
chr16:
56117766-56117860
95
FA10A_DANRE
1-23
23
1
A:1-22
22
1.2
ENSDART00000056095
2
ENSDARE00000410251
chr16:
56119911-56120083
173
FA10A_DANRE
23-80
58
1
A:22-79
58
1.3
ENSDART00000056095
3
ENSDARE00000410246
chr16:
56122411-56122500
90
FA10A_DANRE
81-110
30
1
A:80-109
30
1.4
ENSDART00000056095
4
ENSDARE00000410243
chr16:
56122582-56122679
98
FA10A_DANRE
111-126
16
1
A:110-125
16
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2qo6a_ (A:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
automated matches
(26)
Zebrafish (Danio rerio) [TaxId: 7955]
(3)
1a
d2qo6a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2qo6A00 (A:1-125)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Zebrafish (Danio rerio)
(5)
1a
2qo6A00
A:1-125
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lipocalin_2qo6A01 (A:3-125)
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Clan
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Calycin
(163)
Family
:
Lipocalin
(123)
Danio rerio (Zebrafish) (Brachydanio rerio)
(5)
1a
Lipocalin-2qo6A01
A:3-125
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Chain A
Asymmetric Unit 1
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