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2QNV
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PREGNANE X RECEPTOR BOUND TO COLUPULONE
Authors
:
D. G. Teotico, J. Bischof, M. R. Redinbo
Date
:
19 Jul 07 (Deposition) - 29 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Alpha Helical Sandwhich, Protein-Ligand Complex, Alternative Splicing, Dna-Binding, Metal-Binding, Nucleus, Polymorphism, Receptor, Transcription, Transcription Regulation, Zinc, Zinc-Finger, Nuclear Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. G. Teotico, J. Bischof, M. R. Redinbo
Crystal Structure Of The Pregnane X Receptor Bound To Colupulone
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 3,5-DIHYDROXY-4,6,6-TRIS(3-METHYLB... (CDZa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CDZ
1
Ligand/Ion
3,5-DIHYDROXY-4,6,6-TRIS(3-METHYLBUT-2-EN-1-YL)-2-(2-METHYLPROPANOYL)CYCLOHEXA-2,4-DIEN-1-ONE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:209 , MET A:243 , SER A:247 , GLN A:285 , PHE A:288 , MET A:323 , HIS A:407 , ARG A:410 , LEU A:411 , ILE A:414 , HOH A:445
BINDING SITE FOR RESIDUE CDZ A 1
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018341 (R148Q, chain A, )
2: VAR_033238 (A370T, chain A, )
3: VAR_018342 (R381W, chain A, )
4: VAR_018343 (I403V, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018341
R
148
Q
NR1I2_HUMAN
Polymorphism
---
A
R
148
Q
2
UniProt
VAR_033238
A
370
T
NR1I2_HUMAN
Polymorphism
35761343
A
A
370
T
3
UniProt
VAR_018342
R
381
W
NR1I2_HUMAN
Polymorphism
---
A
R
381
W
4
UniProt
VAR_018343
I
403
V
NR1I2_HUMAN
Polymorphism
---
A
I
403
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.5b (A:142-173)
Exon 1.6a (A:174-265 (gaps))
Exon 1.7 (A:265-309)
Exon 1.8 (A:316-352)
Exon 1.9 (A:352-387)
Exon 1.10b (A:387-434)
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All Exon Boundaries
1: Boundary 1.4a/1.5b
2: Boundary 1.5b/1.6a
3: Boundary 1.6a/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10b
7: Boundary 1.10b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000393716
1a
ENSE00001516304
chr3:
119499331-119501147
1817
NR1I2_HUMAN
-
0
0
-
-
1.3
ENST00000393716
3
ENSE00002156756
chr3:
119526076-119526294
219
NR1I2_HUMAN
1-66
66
0
-
-
1.4a
ENST00000393716
4a
ENSE00000967516
chr3:
119528908-119529041
134
NR1I2_HUMAN
66-111
46
0
-
-
1.5b
ENST00000393716
5b
ENSE00000967517
chr3:
119530386-119530573
188
NR1I2_HUMAN
111-173
63
1
A:142-173
32
1.6a
ENST00000393716
6a
ENSE00000967518
chr3:
119531533-119531807
275
NR1I2_HUMAN
174-265
92
1
A:174-265 (gaps)
92
1.7
ENST00000393716
7
ENSE00001149974
chr3:
119533826-119533968
143
NR1I2_HUMAN
265-313
49
1
A:265-309
45
1.8
ENST00000393716
8
ENSE00000967520
chr3:
119534170-119534286
117
NR1I2_HUMAN
313-352
40
1
A:316-352
37
1.9
ENST00000393716
9
ENSE00000967521
chr3:
119534573-119534678
106
NR1I2_HUMAN
352-387
36
1
A:352-387
36
1.10b
ENST00000393716
10b
ENSE00001945549
chr3:
119535915-119537332
1418
NR1I2_HUMAN
387-434
48
1
A:387-434
48
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2qnva_ (A:)
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Protein Domains
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(
)
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(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Pregnane x receptor, PXR
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2qnva_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2qnvA00 (A:142-434)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
2qnvA00
A:142-434
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hormone_recep_2qnvA01 (A:223-426)
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Clans
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)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-2qnvA01
A:223-426
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Chain A
Asymmetric Unit 1
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Asym.Unit (48 KB)
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