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2QM4
Biol. Unit 2
Info
Asym.Unit (164 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN XLF/CERNUNNOS, A NON-HOMOLOGOUS END-JOINING FACTOR
Authors
:
Y. Li, D. Y. Chirgadze, B. L. Sibanda, V. M. Bolanos-Garcia, O. R. Davies T. L. Blundell
Date
:
14 Jul 07 (Deposition) - 11 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Xrcc4 Like Factor, Homodimer, Beta-Sandwich, Coiled-Coil, Recombination
(Keyword Search:
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Reference
:
Y. Li, D. Y. Chirgadze, V. M. Bolanos-Garcia, B. L. Sibanda, O. R. Davies, P. Ahnesorg, S. P. Jackson, T. L. Blundell
Crystal Structure Of Human Xlf/Cernunnos Reveals Unexpected Differences From Xrcc4 With Implications For Nhej.
Embo J. V. 27 290 2008
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
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No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(4, 7)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_038790 (A14T, chain C/D, )
2: VAR_025704 (R57G, chain C/D, )
3: VAR_038791 (H89R, chain C, )
4: VAR_025705 (C123R, chain C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_038790
A
14
T
NHEJ1_HUMAN
Polymorphism
34689457
C/D
A
14
T
2
UniProt
VAR_025704
R
57
G
NHEJ1_HUMAN
Disease (NHEJ1-SCID)
---
C/D
R
57
G
3
UniProt
VAR_038791
H
89
R
NHEJ1_HUMAN
Polymorphism
1056296
C
H
89
R
4
UniProt
VAR_025705
C
123
R
NHEJ1_HUMAN
Disease (NHEJ1-SCID)
---
C/D
C
123
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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SCOP Domains
(0, 0)
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2qm4C02 (C:143-227)
1b: CATH_2qm4B02 (B:143-227)
1c: CATH_2qm4D02 (D:143-229)
1d: CATH_2qm4A02 (A:143-230)
2a: CATH_2qm4D01 (D:-1-141)
2b: CATH_2qm4A01 (A:-1-141)
2c: CATH_2qm4B01 (B:-1-141)
2d: CATH_2qm4C01 (C:-1-141)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(4)
Human (Homo sapiens)
(3)
1a
2qm4C02
C:143-227
1b
2qm4B02
B:143-227
1c
2qm4D02
D:143-229
1d
2qm4A02
A:143-230
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Dna Repair Protein Xrcc4; Chain: A, domain 1
(5)
Homologous Superfamily
:
[code=2.170.210.10, no name defined]
(5)
Human (Homo sapiens)
(5)
2a
2qm4D01
D:-1-141
2b
2qm4A01
A:-1-141
2c
2qm4B01
B:-1-141
2d
2qm4C01
C:-1-141
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_XLF_2qm4D01 (D:11-173)
1b: PFAM_XLF_2qm4D02 (D:11-173)
1c: PFAM_XLF_2qm4D03 (D:11-173)
1d: PFAM_XLF_2qm4D04 (D:11-173)
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Clan
:
no clan defined [family: XLF]
(2)
Family
:
XLF
(2)
Homo sapiens (Human)
(2)
1a
XLF-2qm4D01
D:11-173
1b
XLF-2qm4D02
D:11-173
1c
XLF-2qm4D03
D:11-173
1d
XLF-2qm4D04
D:11-173
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Asymmetric Unit 1
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Asym.Unit (164 KB)
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