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2QM1
Biol. Unit 1
Info
Asym.Unit (233 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (113 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUCOKINASE FROM ENTEROCOCCUS FAECALIS
Authors
:
Y. Kim, G. Joachimiak, S. Moy, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date
:
13 Jul 07 (Deposition) - 31 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha-Beta Structure, Putative Helix-Turn-Helix, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, G. Joachimiak, S. Moy, A. Joachimiak
Crystal Structure Of Glucokinase From Enterococcus Faecalis
To Be Published
[
close entry info
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
-1
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC4 (SOFTWARE)
8: BC6 (SOFTWARE)
9: BC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:166 , CYS A:176 , CYS A:178 , CYS A:183
BINDING SITE FOR RESIDUE ZN A 1002
2
AC2
SOFTWARE
ASN A:113 , ALA A:115 , ASN A:116 , GLY A:145 , HOH A:1020 , HOH A:1166
BINDING SITE FOR RESIDUE MG A 1007
3
AC3
SOFTWARE
HIS B:166 , CYS B:176 , CYS B:178 , CYS B:183
BINDING SITE FOR RESIDUE ZN B 1003
4
AC4
SOFTWARE
ASN B:113 , ASN B:116 , GLY B:145 , HOH B:1119 , HOH B:1135
BINDING SITE FOR RESIDUE MG B 1008
5
BC1
SOFTWARE
LYS B:125 , GLU B:302 , GLY D:232 , HIS D:234 , HOH D:1033 , HOH D:1092 , HOH D:1093
BINDING SITE FOR RESIDUE SO4 D 1018
6
BC3
SOFTWARE
VAL A:76 , ASP A:77 , ILE A:78 , HIS A:155 , GLY A:159 , HOH A:1089
BINDING SITE FOR RESIDUE GOL A 1011
7
BC4
SOFTWARE
ARG A:242 , PHE A:245 , HOH A:1022
BINDING SITE FOR RESIDUE GOL A 1012
8
BC6
SOFTWARE
GLU A:102 , PRO A:108
BINDING SITE FOR RESIDUE GOL A 1014
9
BC8
SOFTWARE
ARG B:242 , PHE B:245 , TYR B:246 , HOH B:1234
BINDING SITE FOR RESIDUE GOL B 1016
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2qm1A01 (A:-2-129,A:303-321)
1b: CATH_2qm1C01 (C:-2-129,C:303-321)
1c: CATH_2qm1D01 (D:-2-129,D:303-321)
1d: CATH_2qm1B01 (B:-2-129,B:303-322)
1e: CATH_2qm1A02 (A:130-302)
1f: CATH_2qm1B02 (B:130-302)
1g: CATH_2qm1C02 (C:130-302)
1h: CATH_2qm1D02 (D:130-302)
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Classes
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Enterococcus faecalis v583. Organism_taxid: 226185. Strain: v583.
(1)
1a
2qm1A01
A:-2-129,A:303-321
1b
2qm1C01
C:-2-129,C:303-321
1c
2qm1D01
D:-2-129,D:303-321
1d
2qm1B01
B:-2-129,B:303-322
1e
2qm1A02
A:130-302
1f
2qm1B02
B:130-302
1g
2qm1C02
C:130-302
1h
2qm1D02
D:130-302
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_ROK_2qm1D01 (D:7-193)
1b: PFAM_ROK_2qm1D02 (D:7-193)
1c: PFAM_ROK_2qm1D03 (D:7-193)
1d: PFAM_ROK_2qm1D04 (D:7-193)
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Clan
:
Actin_ATPase
(173)
Family
:
ROK
(9)
Enterococcus faecalis (Streptococcus faecalis)
(1)
1a
ROK-2qm1D01
D:7-193
1b
ROK-2qm1D02
D:7-193
1c
ROK-2qm1D03
D:7-193
1d
ROK-2qm1D04
D:7-193
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Biol.Unit 2 (113 KB)
Header - Biol.Unit 2
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