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2QLV
Asym. Unit
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Asym.Unit (201 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HETEROTRIMER CORE OF THE S. CEREVISIAE AMPK HOMOLOG SNF1
Authors
:
G. A. Amodeo, M. J. Rudolph, L. Tong
Date
:
13 Jul 07 (Deposition) - 25 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Heterotrimer, Atp-Binding, Carbohydrate Metabolism, Kinase, Membrane, Nucleotide-Binding, Nucleus, Phosphorylation, Serine/Threonine-Protein Kinase, Transferase, Lipoprotein, Myristate, Cbs Domain, Transcription, Transcription Regulation, Transferase/Protein Binding Complex
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Reference
:
G. A. Amodeo, M. J. Rudolph, L. Tong
Crystal Structure Of The Heterotrimer Core Of Saccharomyces Cerevisiae Ampk Homologue Snf1.
Nature V. 449 492 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: CBS (C:37-97,F:37-97|C:118-181,F:118-18...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBS
PS51371
CBS domain profile.
AAKG_YEAST
37-97
118-181
194-253
262-322
8
C:37-97
F:37-97
C:118-181
F:118-181
C:194-253
F:194-253
C:262-321
F:262-321
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Exons
(3, 6)
Info
All Exons
Exon 1.1 (A:460-630 (gaps) | D:460-630 (gaps...)
Exon 2.1 (C:7-321 (gaps) | F:7-321 (gaps))
Exon 3.1 (B:161-412 (gaps) | E:161-412 (gaps...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
5: Boundary -/3.1
6: Boundary 3.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR477W
1
YDR477W.1
IV:1412366-1414267
1902
SNF1_YEAST
1-633
633
2
A:460-630 (gaps)
D:460-630 (gaps)
171
171
2.1
YGL115W
1
YGL115W.1
VII:292036-293004
969
AAKG_YEAST
1-322
322
2
C:7-321 (gaps)
F:7-321 (gaps)
315
315
3.1
YGL208W
1
YGL208W.1
VII:97342-98589
1248
SIP2_YEAST
1-415
415
2
B:161-412 (gaps)
E:161-412 (gaps)
252
252
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SCOP Domains
(4, 10)
Info
All SCOP Domains
1a: SCOP_d2qlvb1 (B:161-247)
1b: SCOP_d2qlve1 (E:161-247)
2a: SCOP_d2qlvb2 (B:306-412)
2b: SCOP_d2qlve2 (E:307-412)
3a: SCOP_d2qlvc1 (C:7-185)
3b: SCOP_d2qlvc2 (C:186-321)
3c: SCOP_d2qlvf1 (F:7-185)
3d: SCOP_d2qlvf2 (F:186-321)
4a: SCOP_d2qlva1 (A:460-630)
4b: SCOP_d2qlvd_ (D:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
AMPK-beta glycogen binding domain-like
(8)
Protein domain
:
SIP2
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d2qlvb1
B:161-247
1b
d2qlve1
E:161-247
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
AMPKBI-like
(13)
Superfamily
:
AMPKBI-like
(13)
Family
:
AMPKBI-like
(13)
Protein domain
:
SIP2
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
2a
d2qlvb2
B:306-412
2b
d2qlve2
E:307-412
Fold
:
CBS-domain pair
(75)
Superfamily
:
CBS-domain pair
(75)
Family
:
CBS-domain pair
(50)
Protein domain
:
Nuclear protein SNF4
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
3a
d2qlvc1
C:7-185
3b
d2qlvc2
C:186-321
3c
d2qlvf1
F:7-185
3d
d2qlvf2
F:186-321
Fold
:
TBP-like
(289)
Superfamily
:
KA1-like
(20)
Family
:
Ssp2 C-terminal domain-like
(16)
Protein domain
:
Carbon catabolite-derepressing protein kinase SNF1
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
4a
d2qlva1
A:460-630
4b
d2qlvd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_AMPKBI_2qlvE01 (E:307-412)
1b: PFAM_AMPKBI_2qlvE02 (E:307-412)
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Clan
:
no clan defined [family: AMPKBI]
(9)
Family
:
AMPKBI
(9)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
AMPKBI-2qlvE01
E:307-412
1b
AMPKBI-2qlvE02
E:307-412
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Asymmetric Unit 1
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Asym.Unit (201 KB)
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