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2QLU
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACTIVIN RECEPTOR TYPE II KINASE DOMAIN FROM HUMAN
Authors
:
S. Han
Date
:
13 Jul 07 (Deposition) - 20 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tgf-Beta, Actriib, Serine/Threonine Kinase Receptor, Alternative Splicing, Atp-Binding, Disease Mutation, Glycoprotein, Magnesium, Manganese, Membrane, Metal-Binding, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Transferase, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Han, P. Loulakis, M. Griffor, Z. Xie
Crystal Structure Of Activin Receptor Type Iib Kinase Domain From Human At 2. 0 Angstrom Resolution
Protein Sci. V. 16 2272 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ADENINE (ADEa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADE
1
Ligand/Ion
ADENINE
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:268 , LYS A:330 , SER A:331 , HOH A:501 , HOH A:521 , HOH A:533 , HOH A:557 , HOH A:558 , HOH A:591
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
LYS A:323 , LYS A:325 , ARG A:363 , HIS A:421 , HOH A:620
BINDING SITE FOR RESIDUE SO4 A 2
3
AC3
SOFTWARE
ALA A:215 , THR A:265 , ALA A:266 , PHE A:267 , HIS A:268 , LEU A:328
BINDING SITE FOR RESIDUE ADE A 488
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050594 (E459D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050594
E
459
D
AVR2B_HUMAN
Polymorphism
500611
A
E
459
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ST (A:317-329)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AVR2B_HUMAN
317-329
1
A:317-329
[
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Exons
(7, 7)
Info
All Exons
Exon 1.4c (A:188-222)
Exon 1.5 (A:223-270)
Exon 1.6 (A:271-320)
Exon 1.7 (A:320-358)
Exon 1.8 (A:359-405)
Exon 1.9 (A:405-448)
Exon 1.10c (A:449-484)
View:
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All Exon Boundaries
1: Boundary 1.4a/1.4c
2: Boundary 1.4c/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10c
8: Boundary 1.10c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000352511
1a
ENSE00001861259
chr3:
38495342-38495865
524
AVR2B_HUMAN
1-18
18
0
-
-
1.2b
ENST00000352511
2b
ENSE00001321635
chr3:
38518778-38518985
208
AVR2B_HUMAN
18-87
70
0
-
-
1.3
ENST00000352511
3
ENSE00001300378
chr3:
38519352-38519461
110
AVR2B_HUMAN
87-124
38
0
-
-
1.4a
ENST00000352511
4a
ENSE00001138896
chr3:
38519632-38519783
152
AVR2B_HUMAN
124-174
51
0
-
-
1.4c
ENST00000352511
4c
ENSE00001138889
chr3:
38519866-38520009
144
AVR2B_HUMAN
175-222
48
1
A:188-222
35
1.5
ENST00000352511
5
ENSE00000763025
chr3:
38520619-38520762
144
AVR2B_HUMAN
223-270
48
1
A:223-270
48
1.6
ENST00000352511
6
ENSE00000763107
chr3:
38521169-38521317
149
AVR2B_HUMAN
271-320
50
1
A:271-320
50
1.7
ENST00000352511
7
ENSE00000763140
chr3:
38522842-38522956
115
AVR2B_HUMAN
320-358
39
1
A:320-358
39
1.8
ENST00000352511
8
ENSE00000763181
chr3:
38523689-38523827
139
AVR2B_HUMAN
359-405
47
1
A:359-405
47
1.9
ENST00000352511
9
ENSE00000825682
chr3:
38523921-38524051
131
AVR2B_HUMAN
405-448
44
1
A:405-448
44
1.10c
ENST00000352511
10c
ENSE00001233608
chr3:
38524629-38524948
320
AVR2B_HUMAN
449-512
64
1
A:449-484
36
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2qlua_ (A:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d2qlua_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2qluA01 (A:188-269)
2a: CATH_2qluA02 (A:270-484)
View:
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Classes
(
)
(
)
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)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2qluA01
A:188-269
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2qluA02
A:270-484
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close CATH info
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_2qluA01 (A:190-478)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2qluA01
A:190-478
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Chain A
Asymmetric Unit 1
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