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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
2QL1
Asym. Unit
Info
Asym.Unit (44 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
STRUCTURAL CHARACTERIZATION OF A MUTATED, ADCC-ENHANCED HUMAN FC FRAGMENT
Authors
:
V. Oganesyan, H. Wu, W. F. Dall'Acqua
Date
:
12 Jul 07 (Deposition) - 01 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A,C
#
Biol. Unit 1: A,C
#
(2x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Antibody, Adcc, Fc Fragment, Mutation, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Oganesyan, M. M. Damschroder, W. Leach, H. Wu, W. F. Dall'Acqua
Structural Characterization Of A Mutated, Adcc-Enhanced Human Fc Fragment
Mol. Immunol. V. 45 1872 2008
[
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Hetero Components
(6, 13)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-D-GALACTOSE (GALa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
ZN
4
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:265 , GLN A:295 , ASN A:297
BINDING SITE FOR RESIDUE NAG C 1
02
AC2
SOFTWARE
ARG A:301
BINDING SITE FOR RESIDUE NAG C 2
03
AC3
SOFTWARE
PHE A:241 , PHE A:243
BINDING SITE FOR RESIDUE BMA C 3
04
AC4
SOFTWARE
PHE A:241
BINDING SITE FOR RESIDUE MAN C 4
05
AC5
SOFTWARE
LYS A:334
BINDING SITE FOR RESIDUE NAG C 5
06
AC7
SOFTWARE
PHE A:243 , LYS A:246 , THR A:260 , ASN A:384
BINDING SITE FOR RESIDUE NAG C 8
07
AC8
SOFTWARE
PRO A:244 , LYS A:246 , GLU A:258 , THR A:260 , HOH C:10 , HOH C:23
BINDING SITE FOR RESIDUE GAL C 9
08
AC9
SOFTWARE
GLU A:272
BINDING SITE FOR RESIDUE FUC C 11
09
BC1
SOFTWARE
HIS A:310 , HIS A:435 , HOH A:451 , HOH A:458
BINDING SITE FOR RESIDUE ZN A 1
10
BC2
SOFTWARE
GLU A:318 , HOH A:465
BINDING SITE FOR RESIDUE ZN A 3
11
BC3
SOFTWARE
GLU A:345 , HOH A:453
BINDING SITE FOR RESIDUE ZN A 4
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003887 (E356E, chain A, )
2: VAR_003888 (M358M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003887
D
239
E
IGHG1_HUMAN
Unclassified
---
A
E
356
E
2
UniProt
VAR_003888
L
241
M
IGHG1_HUMAN
Unclassified
---
A
M
358
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:423-429)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG1_HUMAN
81-87
306-312
1
-
A:423-429
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Exons
(2, 2)
Info
All Exons
Exon 1.3b (A:236-341)
Exon 1.4c (A:341-444)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.4c
3: Boundary 1.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000390549
1
ENSE00001838294
chr14:
106209408-106209114
295
IGHG1_HUMAN
1-99
99
0
-
-
1.2
ENST00000390549
2
ENSE00001719055
chr14:
106208722-106208678
45
IGHG1_HUMAN
99-114
16
0
-
-
1.3b
ENST00000390549
3b
ENSE00001776617
chr14:
106208559-106208230
330
IGHG1_HUMAN
114-224
111
1
A:236-341
106
1.4c
ENST00000390549
4c
ENSE00001837466
chr14:
106208132-106207675
458
IGHG1_HUMAN
224-330
107
1
A:341-444
104
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2ql1a1 (A:236-339)
2a: SCOP_d2ql1a2 (A:340-444)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d2ql1a1
A:236-339
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Human (Homo sapiens) [TaxId: 9606]
(31)
2a
d2ql1a2
A:340-444
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ql1A02 (A:338-443)
1b: CATH_2ql1A01 (A:238-337)
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)
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)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
2ql1A02
A:338-443
1b
2ql1A01
A:238-337
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_C1_set_2ql1A01 (A:352-437)
1b: PFAM_C1_set_2ql1A02 (A:352-437)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-2ql1A01
A:352-437
1b
C1-set-2ql1A02
A:352-437
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (44 KB)
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