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2QKK
Biol. Unit 5
Info
Asym.Unit (339 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (63 KB)
Biol.Unit 4 (62 KB)
Biol.Unit 5 (62 KB)
Biol.Unit 6 (38 KB)
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(1)
Title
:
HUMAN RNASE H CATALYTIC DOMAIN MUTANT D210N IN COMPLEX WITH 14-MER RNA/DNA HYBRID
Authors
:
M. Nowotny, S. A. Gaidamakov, R. Ghirlando, S. M. Cerritelli, R. J. Crouch, W. Yang
Date
:
11 Jul 07 (Deposition) - 13 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,R,S,T,U,W,X,Z
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Biol. Unit 5: R,S,T,U (1x)
Biol. Unit 6: W,X,Z (1x)
Keywords
:
Rnase H; Rna/Dna Hybrid, Hydrolase/Dna/Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nowotny, S. A. Gaidamakov, R. Ghirlando, S. M. Cerritelli, R. J. Crouch, W. Yang
Structure Of Human Rnase H1 Complexed With An Rna/Dna Hybrid: Insight Into Hiv Reverse Transcription
Mol. Cell V. 28 264 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
2a: CHLORIDE ION (CLa)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
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Sites
(3, 3)
Info
All Sites
1: BC4 (SOFTWARE)
2: BC5 (SOFTWARE)
3: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
BC4
SOFTWARE
ASP R:145 , GLY R:146 , ASP R:274 , C T:6
BINDING SITE FOR RESIDUE CA R 1011
2
BC5
SOFTWARE
ASP S:145 , ASN S:210 , ASP S:274
BINDING SITE FOR RESIDUE CA S 1007
3
BC8
SOFTWARE
THR A:219 , ILE A:256 , GLN A:257 , TRP A:258 , ASN R:220 , GLN R:223
BINDING SITE FOR RESIDUE MES A 2002
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_074561 (V142I, chain R/S, )
2: VAR_074562 (A185V, chain R/S, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_074561
V
142
I
RNH1_HUMAN
Disease (PEOB2)
766294940
R/S
V
142
I
2
UniProt
VAR_074562
A
185
V
RNH1_HUMAN
Disease (PEOB2)
1057517675
R/S
A
185
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RNASE_H (R:136-282,S:136-282)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_H
PS50879
RNase H domain profile.
RNH1_HUMAN
136-282
2
-
-
-
-
-
-
-
R:136-282
S:136-282
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 11)
Info
all PFAM domains
1a: PFAM_RNase_H_2qkkW01 (W:137-282)
1b: PFAM_RNase_H_2qkkW02 (W:137-282)
1c: PFAM_RNase_H_2qkkW03 (W:137-282)
1d: PFAM_RNase_H_2qkkW04 (W:137-282)
1e: PFAM_RNase_H_2qkkW05 (W:137-282)
1f: PFAM_RNase_H_2qkkW06 (W:137-282)
1g: PFAM_RNase_H_2qkkW07 (W:137-282)
1h: PFAM_RNase_H_2qkkW08 (W:137-282)
1i: PFAM_RNase_H_2qkkW09 (W:137-282)
1j: PFAM_RNase_H_2qkkW10 (W:137-282)
1k: PFAM_RNase_H_2qkkW11 (W:137-282)
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Clan
:
RNase_H
(288)
Family
:
RNase_H
(128)
Homo sapiens (Human)
(3)
1a
RNase_H-2qkkW01
W:137-282
1b
RNase_H-2qkkW02
W:137-282
1c
RNase_H-2qkkW03
W:137-282
1d
RNase_H-2qkkW04
W:137-282
1e
RNase_H-2qkkW05
W:137-282
1f
RNase_H-2qkkW06
W:137-282
1g
RNase_H-2qkkW07
W:137-282
1h
RNase_H-2qkkW08
W:137-282
1i
RNase_H-2qkkW09
W:137-282
1j
RNase_H-2qkkW10
W:137-282
1k
RNase_H-2qkkW11
W:137-282
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (339 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (64 KB)
Header - Biol.Unit 2
Biol.Unit 3 (63 KB)
Header - Biol.Unit 3
Biol.Unit 4 (62 KB)
Header - Biol.Unit 4
Biol.Unit 5 (62 KB)
Header - Biol.Unit 5
Biol.Unit 6 (38 KB)
Header - Biol.Unit 6
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