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2QKH
Asym. Unit
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Asym.Unit (56 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN GIP RECEPTOR IN COMPLEX WITH THE HORMONE GIP
Authors
:
C. Parthier, M. Kleinschmidt, P. Neumann, R. Rudolph, S. Manhart, D. Schlenzig, J. Fanghanel, J. -U. Rahfeld, H. -U. Demuth, M. T. Stubbs
Date
:
11 Jul 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Gpcr, Incretin, Hormone-Gpcr Complex, Extracellular Domain, Ligand Binding Domain, Ecd, Glugacon Receptor Family, Hormone Recognition Fold, Diabetes, Helix Formation, Cleavage On Pair Of Basic Residues, Polymorphism, Alternative Splicing, G-Protein Coupled Receptor, Glycoprotein, Membrane, Transducer, Transmembrane, Signaling Protein/Hormone Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Parthier, M. Kleinschmidt, P. Neumann, R. Rudolph, S. Manhart, D. Schlenzig, J. Fanghanel, J. -U. Rahfeld, H. -U. Demuth, M. T. Stubbs
Crystal Structure Of The Incretin-Bound Extracellular Domain Of A G Protein-Coupled Receptor
Proc. Natl. Acad. Sci. Usa V. 104 13942 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: METHYL-CYCLO-HEPTA-AMYLOSE (QKHa)
2a: D(-)-TARTARIC ACID (TARa)
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No.
Name
Count
Type
Full Name
1
QKH
1
Ligand/Ion
METHYL-CYCLO-HEPTA-AMYLOSE
2
TAR
1
Ligand/Ion
D(-)-TARTARIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:32 , GLY A:33 , TYR A:36 , GLU A:48 , HOH A:226 , TYR B:1 , PHE B:6 , TYR B:10 , SER B:11 , HIS B:18 , PHE B:22 , HOH B:221 , HOH B:264 , HOH B:285
BINDING SITE FOR RESIDUE QKH B 150
2
AC2
SOFTWARE
GLN A:37 , ARG A:41 , ARG A:44 , HOH A:202
BINDING SITE FOR RESIDUE TAR A 151
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_RECEP_F2_3 (A:45-122)
2: GLUCAGON (B:1-23)
3: G_PROTEIN_RECEP_F2_1 (A:61-85)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_RECEP_F2_3
PS50227
G-protein coupled receptors family 2 profile 1.
GIPR_HUMAN
45-122
1
A:45-122
2
GLUCAGON
PS00260
Glucagon / GIP / secretin / VIP family signature.
GIP_HUMAN
52-74
1
B:1-23
3
G_PROTEIN_RECEP_F2_1
PS00649
G-protein coupled receptors family 2 signature 1.
GIPR_HUMAN
61-85
1
A:61-85
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Exons
(1, 1)
Info
All Exons
Exon 1.3 (B:1-32)
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1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000357424
1
ENSE00001192994
chr17:
47045958-47045879
80
GIP_HUMAN
-
0
0
-
-
1.2
ENST00000357424
2
ENSE00001430288
chr17:
47044615-47044509
107
GIP_HUMAN
1-29
29
0
-
-
1.3
ENST00000357424
3
ENSE00001044108
chr17:
47041842-47041672
171
GIP_HUMAN
29-86
58
1
B:1-32
32
1.4
ENST00000357424
4
ENSE00001044115
chr17:
47039181-47039089
93
GIP_HUMAN
86-117
32
0
-
-
1.5
ENST00000357424
5
ENSE00001192996
chr17:
47038349-47038248
102
GIP_HUMAN
117-151
35
0
-
-
1.6
ENST00000357424
6
ENSE00001192983
chr17:
47036078-47035916
163
GIP_HUMAN
151-153
3
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_HRM_2qkhA01 (A:58-121)
2a: PFAM_Hormone_2_2qkhB01 (B:1-28)
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Clans
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Organisms
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)
(
)
Clan
:
no clan defined [family: HRM]
(9)
Family
:
HRM
(9)
Homo sapiens (Human)
(7)
1a
HRM-2qkhA01
A:58-121
Clan
:
no clan defined [family: Hormone_2]
(11)
Family
:
Hormone_2
(11)
Homo sapiens (Human)
(9)
2a
Hormone_2-2qkhB01
B:1-28
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Asymmetric Unit 1
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