PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2QJY
Asym. Unit
Info
Asym.Unit (885 KB)
Biol.Unit 1 (297 KB)
Biol.Unit 2 (298 KB)
Biol.Unit 3 (296 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DOUBLE MUTANT WITH STIGMATELLIN AND UQ2
Authors
:
L. Esser, D. Xia
Date
:
09 Jul 07 (Deposition) - 25 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Keywords
:
Cytochrome B, 8 Tm Helixces Cytochrome C1, 1 C-Term Tm Helix Rieske, 1 N-Term Tm Helix, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Esser, M. Elberry, F. Zhou, C. A. Yu, L. Yu, D. Xia
Inhibitor-Complexed Structures Of The Cytochrome Bc1 From The Photosynthetic Bacterium Rhodobacter Sphaeroides.
J. Biol. Chem. V. 283 2846 2008
[
close entry info
]
Hetero Components
(9, 60)
Info
All Hetero Components
1a: B-2-OCTYLGLUCOSIDE (BGLa)
1b: B-2-OCTYLGLUCOSIDE (BGLb)
1c: B-2-OCTYLGLUCOSIDE (BGLc)
1d: B-2-OCTYLGLUCOSIDE (BGLd)
1e: B-2-OCTYLGLUCOSIDE (BGLe)
1f: B-2-OCTYLGLUCOSIDE (BGLf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
3e: FE2/S2 (INORGANIC) CLUSTER (FESe)
3f: FE2/S2 (INORGANIC) CLUSTER (FESf)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
4f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
4g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
4h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
4i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
4j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
4k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
4l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
4m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
4n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
4o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
4p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
4q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
4r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
5a: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPa)
5b: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPb)
5c: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPc)
5d: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPd)
5e: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPe)
5f: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPf)
6a: SODIUM ION (NAa)
7a: STIGMATELLIN A (SMAa)
7b: STIGMATELLIN A (SMAb)
7c: STIGMATELLIN A (SMAc)
7d: STIGMATELLIN A (SMAd)
7e: STIGMATELLIN A (SMAe)
7f: STIGMATELLIN A (SMAf)
8a: STRONTIUM ION (SRa)
8b: STRONTIUM ION (SRb)
8c: STRONTIUM ION (SRc)
8d: STRONTIUM ION (SRd)
8e: STRONTIUM ION (SRe)
8f: STRONTIUM ION (SRf)
8g: STRONTIUM ION (SRg)
8h: STRONTIUM ION (SRh)
8i: STRONTIUM ION (SRi)
9a: UBIQUINONE-2 (UQ2a)
9b: UBIQUINONE-2 (UQ2b)
9c: UBIQUINONE-2 (UQ2c)
9d: UBIQUINONE-2 (UQ2d)
9e: UBIQUINONE-2 (UQ2e)
9f: UBIQUINONE-2 (UQ2f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGL
6
Ligand/Ion
B-2-OCTYLGLUCOSIDE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
FES
6
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
HEM
18
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
LOP
6
Ligand/Ion
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
6
NA
1
Ligand/Ion
SODIUM ION
7
SMA
6
Ligand/Ion
STIGMATELLIN A
8
SR
9
Ligand/Ion
STRONTIUM ION
9
UQ2
6
Ligand/Ion
UBIQUINONE-2
[
close Hetero Component info
]
Sites
(57, 57)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:265 , PHE A:269 , PHE B:13 , GLU B:14 , GLY B:15 , ASN B:123 , GLY B:124 , LYS B:227 , HOH B:1060
BINDING SITE FOR RESIDUE BGL B 1041
02
AC2
SOFTWARE
PHE D:269 , PHE E:13 , GLU E:14 , GLY E:15 , PRO E:16 , LYS E:227
BINDING SITE FOR RESIDUE BGL E 1042
03
AC3
SOFTWARE
PHE G:269 , PHE H:13 , GLY H:15 , LYS H:227
BINDING SITE FOR RESIDUE BGL G 1043
04
AC4
SOFTWARE
PHE J:269 , GLU K:14 , GLY K:15 , PRO K:16 , GLY K:124 , LYS K:227
BINDING SITE FOR RESIDUE BGL K 1044
05
AC5
SOFTWARE
PHE M:269 , GLU N:14 , GLY N:15 , PRO N:16 , ASN N:123 , GLY N:124 , LYS N:227
BINDING SITE FOR RESIDUE BGL N 1045
06
AC6
SOFTWARE
ALA P:265 , PHE P:269 , PHE Q:13 , GLU Q:14 , GLY Q:15 , PRO Q:16 , ASN Q:123 , GLY Q:124 , LYS Q:227
BINDING SITE FOR RESIDUE BGL P 1046
07
AC7
SOFTWARE
ASP B:8 , VAL B:9 , GLU B:14 , GLU B:129
BINDING SITE FOR RESIDUE SR B 1011
08
AC8
SOFTWARE
ASP E:8 , VAL E:9 , GLU E:14 , GLU E:129
BINDING SITE FOR RESIDUE SR E 1012
09
AC9
SOFTWARE
ASP H:8 , VAL H:9 , GLU H:14 , GLU H:129
BINDING SITE FOR RESIDUE SR H 1013
10
BC1
SOFTWARE
GLN I:92 , ARG I:163
BINDING SITE FOR RESIDUE CL I 2004
11
BC2
SOFTWARE
ASP K:8 , VAL K:9 , GLU K:14 , GLU K:129
BINDING SITE FOR RESIDUE SR K 1014
12
BC3
SOFTWARE
ASP N:8 , VAL N:9 , GLU N:129
BINDING SITE FOR RESIDUE SR N 1015
13
BC4
SOFTWARE
ASP Q:8 , VAL Q:9 , GLU Q:14 , GLU Q:129
BINDING SITE FOR RESIDUE SR Q 1016
14
BC5
SOFTWARE
SER I:87 , GLN I:92 , HOH I:2003 , SER R:87 , GLN R:92 , HOH R:2002
BINDING SITE FOR RESIDUE NA R 2001
15
BC6
SOFTWARE
GLN I:89 , GLN R:92 , ARG R:163
BINDING SITE FOR RESIDUE CL R 2005
16
BC7
SOFTWARE
TRP A:45 , GLY A:48 , LEU A:51 , ALA A:52 , HIS A:111 , ARG A:114 , SER A:120 , ARG A:125 , GLY A:132 , MET A:133 , ILE A:135 , VAL A:209 , HIS A:212 , PHE A:216 , GLY A:220 , ASN A:221 , ASN A:222 , UQ2 A:1101 , HOH A:1171 , HOH A:1172
BINDING SITE FOR RESIDUE HEM A 501
17
BC8
SOFTWARE
GLN A:58 , GLY A:62 , ILE A:63 , ALA A:66 , ARG A:94 , HIS A:97 , THR A:142 , GLY A:146 , LEU A:149 , PRO A:150 , HIS A:198 , TYR A:199 , PRO A:202 , HOH A:1173
BINDING SITE FOR RESIDUE HEM A 502
18
BC9
SOFTWARE
LEU A:137 , MET A:154 , GLY A:158 , VAL A:161 , ILE A:162 , ILE A:292 , PRO A:294 , GLU A:295 , PHE A:298 , TYR A:302 , MET A:336 , PHE A:337 , ILE A:340 , CYS F:151 , HIS F:152
BINDING SITE FOR RESIDUE SMA A 1001
19
CC1
SOFTWARE
MET A:44 , LEU A:103 , ILE A:106 , TYR A:117 , TYR A:118 , ARG A:358 , TRP A:368 , PHE A:374
BINDING SITE FOR RESIDUE LOP A 1021
20
CC2
SOFTWARE
ILE A:35 , VAL A:49 , PHE A:216 , HIS A:217 , PHE A:244 , HEM A:501
BINDING SITE FOR RESIDUE UQ2 A 1101
21
CC3
SOFTWARE
VAL B:35 , CYS B:36 , CYS B:39 , HIS B:40 , LEU B:94 , ASN B:96 , PRO B:98 , MET B:103 , ARG B:107 , TYR B:130 , PHE B:160 , ILE B:183 , ALA B:184 , MET B:185 , PRO B:188 , HOH B:1055
BINDING SITE FOR RESIDUE HEM B 301
22
CC4
SOFTWARE
CYS C:129 , HIS C:131 , LEU C:132 , CYS C:149 , HIS C:152 , SER C:154
BINDING SITE FOR RESIDUE FES C 200
23
CC5
SOFTWARE
TRP D:45 , GLY D:48 , PHE D:104 , HIS D:111 , ARG D:114 , SER D:120 , ARG D:125 , TRP D:129 , GLY D:132 , MET D:133 , ILE D:135 , HIS D:212 , PHE D:216 , GLY D:220 , ASN D:221 , ASN D:222 , UQ2 D:1102 , HOH D:1115 , HOH D:1161 , HOH D:1162 , HOH D:1163
BINDING SITE FOR RESIDUE HEM D 501
24
CC6
SOFTWARE
GLN D:58 , GLY D:62 , ILE D:63 , ALA D:66 , ARG D:94 , HIS D:97 , THR D:142 , ALA D:143 , GLY D:146 , LEU D:149 , PRO D:150 , HIS D:198 , TYR D:199 , PRO D:202 , HOH D:1164 , HOH D:1165
BINDING SITE FOR RESIDUE HEM D 502
25
CC7
SOFTWARE
HIS C:152 , MET D:140 , PHE D:144 , MET D:154 , GLY D:158 , VAL D:161 , ILE D:162 , PHE D:194 , ILE D:292 , PRO D:294 , GLU D:295 , PHE D:298 , TYR D:302 , MET D:336 , PHE D:337 , ILE D:340
BINDING SITE FOR RESIDUE SMA D 1002
26
CC8
SOFTWARE
MET D:44 , LEU D:103 , PHE D:113 , TYR D:117 , TYR D:118 , LEU D:274 , ARG D:358 , TRP D:368 , PHE D:374
BINDING SITE FOR RESIDUE LOP D 1022
27
CC9
SOFTWARE
VAL D:49 , ILE D:213 , PHE D:216 , HIS D:217 , PHE D:244 , ASP D:252 , HEM D:501
BINDING SITE FOR RESIDUE UQ2 D 1102
28
DC1
SOFTWARE
VAL E:35 , CYS E:36 , CYS E:39 , HIS E:40 , LEU E:94 , ASN E:96 , PRO E:98 , MET E:103 , ARG E:107 , TYR E:130 , LEU E:135 , PHE E:160 , ILE E:183 , ALA E:184 , MET E:185 , HOH E:1056
BINDING SITE FOR RESIDUE HEM E 301
29
DC2
SOFTWARE
CYS F:129 , HIS F:131 , LEU F:132 , CYS F:149 , HIS F:152 , SER F:154
BINDING SITE FOR RESIDUE FES F 200
30
DC3
SOFTWARE
TRP G:45 , GLY G:48 , LEU G:51 , ALA G:52 , HIS G:111 , ILE G:112 , ARG G:114 , SER G:120 , ARG G:125 , TRP G:129 , GLY G:132 , MET G:133 , ILE G:135 , VAL G:209 , HIS G:212 , PHE G:216 , GLY G:220 , ASN G:221 , ASN G:222 , UQ2 G:1103 , HOH G:1120 , HOH G:1164 , HOH G:1165 , HOH G:1166
BINDING SITE FOR RESIDUE HEM G 501
31
DC4
SOFTWARE
GLN G:58 , GLY G:62 , ILE G:63 , ALA G:66 , ARG G:94 , HIS G:97 , ALA G:98 , THR G:142 , ALA G:143 , GLY G:146 , LEU G:149 , PRO G:150 , HIS G:198 , TYR G:199 , PRO G:202
BINDING SITE FOR RESIDUE HEM G 502
32
DC5
SOFTWARE
MET G:140 , PHE G:144 , MET G:145 , GLY G:158 , VAL G:161 , ILE G:162 , LEU G:197 , ILE G:292 , PRO G:294 , GLU G:295 , PHE G:298 , TYR G:302 , MET G:336 , PHE G:337 , ILE G:340 , HIS L:152
BINDING SITE FOR RESIDUE SMA G 1003
33
DC6
SOFTWARE
MET G:44 , LEU G:103 , ILE G:106 , PHE G:113 , TYR G:117 , TYR G:118 , ARG G:358 , PHE G:367 , TRP G:368
BINDING SITE FOR RESIDUE LOP G 1023
34
DC7
SOFTWARE
VAL G:49 , ILE G:213 , PHE G:216 , HIS G:217 , PHE G:244 , ASP G:252 , HEM G:501
BINDING SITE FOR RESIDUE UQ2 G 1103
35
DC8
SOFTWARE
VAL H:35 , CYS H:36 , CYS H:39 , HIS H:40 , LEU H:94 , ASN H:96 , PRO H:98 , MET H:103 , ARG H:107 , TYR H:130 , LEU H:135 , PHE H:160 , ILE H:183 , ALA H:184 , MET H:185 , HOH H:351 , HOH H:352 , HOH H:353
BINDING SITE FOR RESIDUE HEM H 301
36
DC9
SOFTWARE
CYS I:129 , HIS I:131 , LEU I:132 , CYS I:149 , HIS I:152 , SER I:154
BINDING SITE FOR RESIDUE FES I 200
37
EC1
SOFTWARE
TRP J:45 , GLY J:48 , LEU J:51 , ALA J:52 , HIS J:111 , ARG J:114 , SER J:120 , ARG J:125 , THR J:128 , TRP J:129 , GLY J:132 , MET J:133 , ILE J:135 , VAL J:209 , HIS J:212 , PHE J:216 , GLY J:220 , ASN J:221 , ASN J:222 , UQ2 J:1104 , HOH J:1158
BINDING SITE FOR RESIDUE HEM J 501
38
EC2
SOFTWARE
GLN J:58 , GLY J:62 , ILE J:63 , ARG J:94 , HIS J:97 , THR J:142 , GLY J:146 , LEU J:149 , PRO J:150 , HIS J:198 , TYR J:199 , PRO J:202
BINDING SITE FOR RESIDUE HEM J 502
39
EC3
SOFTWARE
CYS I:151 , HIS I:152 , MET J:140 , PHE J:144 , MET J:145 , GLY J:158 , VAL J:161 , ILE J:162 , LEU J:180 , PHE J:194 , ILE J:292 , PRO J:294 , GLU J:295 , PHE J:298 , PHE J:301 , TYR J:302 , MET J:336 , PHE J:337 , ILE J:340
BINDING SITE FOR RESIDUE SMA J 1004
40
EC4
SOFTWARE
LEU J:103 , TYR J:117 , TYR J:118 , ILE J:266 , TRP J:296 , ARG J:358
BINDING SITE FOR RESIDUE LOP J 1024
41
EC5
SOFTWARE
THR J:32 , VAL J:49 , ALA J:206 , ILE J:213 , PHE J:216 , HIS J:217 , PHE J:244 , ASP J:252 , HEM J:501
BINDING SITE FOR RESIDUE UQ2 J 1104
42
EC6
SOFTWARE
CYS K:36 , CYS K:39 , HIS K:40 , LEU K:94 , ASN K:96 , PRO K:98 , MET K:103 , ARG K:107 , TYR K:130 , LEU K:135 , PHE K:160 , ILE K:183 , ALA K:184 , MET K:185 , PRO K:188
BINDING SITE FOR RESIDUE HEM K 301
43
EC7
SOFTWARE
CYS L:129 , HIS L:131 , LEU L:132 , CYS L:149 , HIS L:152 , SER L:154
BINDING SITE FOR RESIDUE FES L 200
44
EC8
SOFTWARE
TRP M:45 , GLY M:48 , LEU M:51 , ALA M:52 , HIS M:111 , ARG M:114 , ARG M:125 , TRP M:129 , GLY M:132 , MET M:133 , ILE M:135 , TYR M:136 , VAL M:209 , HIS M:212 , PHE M:216 , GLY M:220 , ASN M:221 , ASN M:222 , HOH M:543 , UQ2 M:1105
BINDING SITE FOR RESIDUE HEM M 501
45
EC9
SOFTWARE
GLN M:58 , GLY M:62 , ILE M:63 , ARG M:94 , HIS M:97 , THR M:142 , GLY M:146 , LEU M:149 , PRO M:150 , HIS M:198 , TYR M:199 , PRO M:202
BINDING SITE FOR RESIDUE HEM M 502
46
FC1
SOFTWARE
MET M:140 , ALA M:141 , PHE M:144 , MET M:145 , GLY M:158 , VAL M:161 , ILE M:162 , LEU M:197 , ILE M:292 , PRO M:294 , GLU M:295 , PHE M:298 , TYR M:302 , MET M:336 , PHE M:337 , ILE M:340 , CYS R:151 , HIS R:152
BINDING SITE FOR RESIDUE SMA M 1005
47
FC2
SOFTWARE
MET M:44 , PHE M:113 , ARG M:114 , TYR M:117 , TYR M:118 , ARG M:358 , TRP M:368 , PHE M:374
BINDING SITE FOR RESIDUE LOP M 1025
48
FC3
SOFTWARE
VAL M:49 , PHE M:216 , HIS M:217 , ASN M:221 , PHE M:244 , ASP M:252 , HEM M:501
BINDING SITE FOR RESIDUE UQ2 M 1105
49
FC4
SOFTWARE
VAL N:35 , CYS N:36 , CYS N:39 , HIS N:40 , LEU N:94 , ASN N:96 , PRO N:98 , MET N:103 , ARG N:107 , TYR N:130 , LEU N:135 , PHE N:160 , ALA N:184 , MET N:185
BINDING SITE FOR RESIDUE HEM N 301
50
FC5
SOFTWARE
CYS O:129 , HIS O:131 , LEU O:132 , CYS O:149 , HIS O:152 , SER O:154
BINDING SITE FOR RESIDUE FES O 200
51
FC6
SOFTWARE
TRP P:45 , GLY P:48 , LEU P:51 , ALA P:52 , HIS P:111 , ILE P:112 , ARG P:114 , SER P:120 , ARG P:125 , TRP P:129 , GLY P:132 , MET P:133 , ILE P:135 , VAL P:209 , HIS P:212 , PHE P:216 , GLY P:220 , ASN P:222 , HOH P:655 , HOH P:656 , HOH P:657 , UQ2 P:1106
BINDING SITE FOR RESIDUE HEM P 501
52
FC7
SOFTWARE
GLN P:58 , GLY P:62 , ILE P:63 , LEU P:65 , ALA P:66 , ARG P:94 , HIS P:97 , ALA P:101 , THR P:142 , GLY P:146 , LEU P:149 , PRO P:150 , HIS P:198 , TYR P:199 , PRO P:202 , HOH P:627 , HOH P:658
BINDING SITE FOR RESIDUE HEM P 502
53
FC8
SOFTWARE
HIS O:152 , MET P:140 , PHE P:144 , GLY P:158 , VAL P:161 , ILE P:162 , LEU P:197 , ILE P:292 , VAL P:293 , PRO P:294 , GLU P:295 , PHE P:298 , TYR P:302 , MET P:336 , PHE P:337 , ILE P:340 , HOH P:641
BINDING SITE FOR RESIDUE SMA P 1006
54
FC9
SOFTWARE
MET P:44 , LEU P:103 , ILE P:106 , PHE P:113 , TYR P:117 , TYR P:118 , LEU P:274 , ARG P:358 , TRP P:368 , PHE P:374
BINDING SITE FOR RESIDUE LOP P 1026
55
GC1
SOFTWARE
VAL P:49 , PHE P:216 , HIS P:217 , ASN P:221 , PHE P:244 , ASP P:252 , HEM P:501
BINDING SITE FOR RESIDUE UQ2 P 1106
56
GC2
SOFTWARE
VAL Q:35 , CYS Q:36 , CYS Q:39 , HIS Q:40 , LEU Q:94 , ASN Q:96 , PRO Q:98 , ARG Q:107 , TYR Q:130 , LEU Q:135 , PHE Q:160 , ILE Q:183 , ALA Q:184 , MET Q:185 , HOH Q:673
BINDING SITE FOR RESIDUE HEM Q 301
57
GC3
SOFTWARE
CYS R:129 , HIS R:131 , LEU R:132 , GLY R:133 , CYS R:149 , HIS R:152 , SER R:154
BINDING SITE FOR RESIDUE FES R 200
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 24)
Info
All PROSITE Patterns/Profiles
1: CYTB_NTER (A:15-225,D:15-225,G:15-225,J:15-22...)
2: CYTC (B:23-142,E:23-142,H:23-142,K:23-14...)
3: RIESKE (C:117-185,F:117-185,I:117-185,L:11...)
4: CYTB_CTER (A:234-422,D:234-422,G:234-422,J:23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTB_NTER
PS51002
Cytochrome b/b6 N-terminal region profile.
CYB_RHOSH
15-225
6
A:15-225
D:15-225
G:15-225
J:15-225
M:15-225
P:15-225
2
CYTC
PS51007
Cytochrome c family profile.
CY1_RHOSH
45-164
6
B:23-142
E:23-142
H:23-142
K:23-142
N:23-142
Q:23-142
3
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_RHOSH
117-185
6
C:117-185
F:117-185
I:117-185
L:117-185
O:117-185
R:117-185
4
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_RHOSH
234-422
6
A:234-422
D:234-422
G:234-422
J:234-422
M:234-422
P:234-422
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(5, 30)
Info
all CATH domains
1a: CATH_2qjyB01 (B:1-221)
1b: CATH_2qjyE01 (E:1-221)
1c: CATH_2qjyH01 (H:1-221)
1d: CATH_2qjyK01 (K:1-221)
1e: CATH_2qjyN01 (N:1-221)
1f: CATH_2qjyQ01 (Q:1-221)
2a: CATH_2qjyA00 (A:3-430)
2b: CATH_2qjyD00 (D:3-430)
2c: CATH_2qjyG00 (G:3-430)
2d: CATH_2qjyJ00 (J:3-430)
2e: CATH_2qjyM00 (M:3-430)
2f: CATH_2qjyP00 (P:3-430)
3a: CATH_2qjyB02 (B:222-256)
3b: CATH_2qjyE02 (E:222-256)
3c: CATH_2qjyH02 (H:222-256)
3d: CATH_2qjyK02 (K:222-256)
3e: CATH_2qjyN02 (N:222-256)
3f: CATH_2qjyQ02 (Q:222-256)
4a: CATH_2qjyC01 (C:9-41)
4b: CATH_2qjyF01 (F:9-41)
4c: CATH_2qjyI01 (I:9-41)
4d: CATH_2qjyL01 (L:9-41)
4e: CATH_2qjyO01 (O:9-41)
4f: CATH_2qjyR01 (R:9-41)
5a: CATH_2qjyC02 (C:42-187)
5b: CATH_2qjyF02 (F:42-187)
5c: CATH_2qjyI02 (I:42-187)
5d: CATH_2qjyL02 (L:42-187)
5e: CATH_2qjyO02 (O:42-187)
5f: CATH_2qjyR02 (R:42-187)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
1a
2qjyB01
B:1-221
1b
2qjyE01
E:1-221
1c
2qjyH01
H:1-221
1d
2qjyK01
K:1-221
1e
2qjyN01
N:1-221
1f
2qjyQ01
Q:1-221
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
2a
2qjyA00
A:3-430
2b
2qjyD00
D:3-430
2c
2qjyG00
G:3-430
2d
2qjyJ00
J:3-430
2e
2qjyM00
M:3-430
2f
2qjyP00
P:3-430
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
3a
2qjyB02
B:222-256
3b
2qjyE02
E:222-256
3c
2qjyH02
H:222-256
3d
2qjyK02
K:222-256
3e
2qjyN02
N:222-256
3f
2qjyQ02
Q:222-256
Homologous Superfamily
:
Single helix bin
(16)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
4a
2qjyC01
C:9-41
4b
2qjyF01
F:9-41
4c
2qjyI01
I:9-41
4d
2qjyL01
L:9-41
4e
2qjyO01
O:9-41
4f
2qjyR01
R:9-41
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
5a
2qjyC02
C:42-187
5b
2qjyF02
F:42-187
5c
2qjyI02
I:42-187
5d
2qjyL02
L:42-187
5e
2qjyO02
O:42-187
5f
2qjyR02
R:42-187
[
close CATH info
]
Pfam Domains
(5, 30)
Info
all PFAM domains
1a: PFAM_Cytochrom_B_N_2_2qjyP01 (P:102-277)
1b: PFAM_Cytochrom_B_N_2_2qjyP02 (P:102-277)
1c: PFAM_Cytochrom_B_N_2_2qjyP03 (P:102-277)
1d: PFAM_Cytochrom_B_N_2_2qjyP04 (P:102-277)
1e: PFAM_Cytochrom_B_N_2_2qjyP05 (P:102-277)
1f: PFAM_Cytochrom_B_N_2_2qjyP06 (P:102-277)
2a: PFAM_Cytochrom_C1_2qjyQ01 (Q:11-255)
2b: PFAM_Cytochrom_C1_2qjyQ02 (Q:11-255)
2c: PFAM_Cytochrom_C1_2qjyQ03 (Q:11-255)
2d: PFAM_Cytochrom_C1_2qjyQ04 (Q:11-255)
2e: PFAM_Cytochrom_C1_2qjyQ05 (Q:11-255)
2f: PFAM_Cytochrom_C1_2qjyQ06 (Q:11-255)
3a: PFAM_Rieske_2qjyR01 (R:95-180)
3b: PFAM_Rieske_2qjyR02 (R:95-180)
3c: PFAM_Rieske_2qjyR03 (R:95-180)
3d: PFAM_Rieske_2qjyR04 (R:95-180)
3e: PFAM_Rieske_2qjyR05 (R:95-180)
3f: PFAM_Rieske_2qjyR06 (R:95-180)
4a: PFAM_UCR_Fe_S_N_2qjyR07 (R:9-41)
4b: PFAM_UCR_Fe_S_N_2qjyR08 (R:9-41)
4c: PFAM_UCR_Fe_S_N_2qjyR09 (R:9-41)
4d: PFAM_UCR_Fe_S_N_2qjyR10 (R:9-41)
4e: PFAM_UCR_Fe_S_N_2qjyR11 (R:9-41)
4f: PFAM_UCR_Fe_S_N_2qjyR12 (R:9-41)
5a: PFAM_Cytochrom_B_C_2qjyP07 (P:282-416)
5b: PFAM_Cytochrom_B_C_2qjyP08 (P:282-416)
5c: PFAM_Cytochrom_B_C_2qjyP09 (P:282-416)
5d: PFAM_Cytochrom_B_C_2qjyP10 (P:282-416)
5e: PFAM_Cytochrom_B_C_2qjyP11 (P:282-416)
5f: PFAM_Cytochrom_B_C_2qjyP12 (P:282-416)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
2heme_cytochrom
(31)
Family
:
Cytochrom_B_N_2
(27)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
1a
Cytochrom_B_N_2-2qjyP01
P:102-277
1b
Cytochrom_B_N_2-2qjyP02
P:102-277
1c
Cytochrom_B_N_2-2qjyP03
P:102-277
1d
Cytochrom_B_N_2-2qjyP04
P:102-277
1e
Cytochrom_B_N_2-2qjyP05
P:102-277
1f
Cytochrom_B_N_2-2qjyP06
P:102-277
Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C1
(24)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
2a
Cytochrom_C1-2qjyQ01
Q:11-255
2b
Cytochrom_C1-2qjyQ02
Q:11-255
2c
Cytochrom_C1-2qjyQ03
Q:11-255
2d
Cytochrom_C1-2qjyQ04
Q:11-255
2e
Cytochrom_C1-2qjyQ05
Q:11-255
2f
Cytochrom_C1-2qjyQ06
Q:11-255
Clan
:
ISP-domain
(54)
Family
:
Rieske
(53)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(8)
3a
Rieske-2qjyR01
R:95-180
3b
Rieske-2qjyR02
R:95-180
3c
Rieske-2qjyR03
R:95-180
3d
Rieske-2qjyR04
R:95-180
3e
Rieske-2qjyR05
R:95-180
3f
Rieske-2qjyR06
R:95-180
Clan
:
TAT
(4)
Family
:
UCR_Fe-S_N
(4)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
4a
UCR_Fe-S_N-2qjyR07
R:9-41
4b
UCR_Fe-S_N-2qjyR08
R:9-41
4c
UCR_Fe-S_N-2qjyR09
R:9-41
4d
UCR_Fe-S_N-2qjyR10
R:9-41
4e
UCR_Fe-S_N-2qjyR11
R:9-41
4f
UCR_Fe-S_N-2qjyR12
R:9-41
Clan
:
no clan defined [family: Cytochrom_B_C]
(27)
Family
:
Cytochrom_B_C
(27)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
5a
Cytochrom_B_C-2qjyP07
P:282-416
5b
Cytochrom_B_C-2qjyP08
P:282-416
5c
Cytochrom_B_C-2qjyP09
P:282-416
5d
Cytochrom_B_C-2qjyP10
P:282-416
5e
Cytochrom_B_C-2qjyP11
P:282-416
5f
Cytochrom_B_C-2qjyP12
P:282-416
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (885 KB)
Header - Asym.Unit
Biol.Unit 1 (297 KB)
Header - Biol.Unit 1
Biol.Unit 2 (298 KB)
Header - Biol.Unit 2
Biol.Unit 3 (296 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2QJY
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help