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2QJH
Biol. Unit 1
Info
Asym.Unit (813 KB)
Biol.Unit 1 (409 KB)
Biol.Unit 2 (407 KB)
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(1)
Title
:
M. JANNASCHII ADH SYNTHASE COVALENTLY BOUND TO DIHYDROXYACETONE PHOSPHATE
Authors
:
S. E. Ealick, M. Morar
Date
:
07 Jul 07 (Deposition) - 30 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,K,L,M,N,O (1x)
Biol. Unit 2: F,G,H,I,J,P,Q,R,S,T (1x)
Keywords
:
Beta-Alpha Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Morar, R. H. White, S. E. Ealick
Structure Of 2-Amino-3, 7-Dideoxy-D-Threo-Hept-6-Ulosonic Acid Synthase, A Catalyst In The Archaeal Pathway For The Biosynthesis Of Aromatic Amino Acids.
Biochemistry V. 46 10562 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pa)
1b: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pb)
1c: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pc)
1d: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pd)
1e: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pe)
1f: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pf)
1g: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pg)
1h: 1,3-DIHYDROXYACETONEPHOSPHATE (13Ph)
1i: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pi)
1j: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pj)
1k: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pk)
1l: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pl)
1m: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pm)
1n: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pn)
1o: 1,3-DIHYDROXYACETONEPHOSPHATE (13Po)
1p: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pp)
1q: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pq)
1r: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pr)
1s: 1,3-DIHYDROXYACETONEPHOSPHATE (13Ps)
1t: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pt)
View:
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Label:
No.
Name
Count
Type
Full Name
1
13P
10
Ligand/Ion
1,3-DIHYDROXYACETONEPHOSPHATE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:31 , ASP A:33 , HIS A:34 , LYS A:184 , ALA A:208 , GLY A:209 , GLY A:210 , VAL A:236 , GLY A:237 , ARG A:238
BINDING SITE FOR RESIDUE 13P A 501
02
AC2
SOFTWARE
PRO B:31 , ASP B:33 , HIS B:34 , LYS B:184 , ALA B:208 , GLY B:209 , GLY B:210 , VAL B:236 , GLY B:237 , ARG B:238
BINDING SITE FOR RESIDUE 13P B 501
03
AC3
SOFTWARE
PRO C:31 , ASP C:33 , HIS C:34 , LYS C:184 , ALA C:208 , GLY C:209 , GLY C:210 , VAL C:236 , GLY C:237 , ARG C:238 , HOH C:508
BINDING SITE FOR RESIDUE 13P C 501
04
AC4
SOFTWARE
PRO D:31 , ASP D:33 , HIS D:34 , LYS D:184 , ALA D:208 , GLY D:209 , GLY D:210 , VAL D:236 , GLY D:237 , ARG D:238
BINDING SITE FOR RESIDUE 13P D 501
05
AC5
SOFTWARE
PRO E:31 , ASP E:33 , HIS E:34 , LYS E:184 , ALA E:208 , GLY E:209 , GLY E:210 , VAL E:236 , GLY E:237 , ARG E:238
BINDING SITE FOR RESIDUE 13P E 501
06
BC2
SOFTWARE
PRO K:31 , ASP K:33 , HIS K:34 , LYS K:184 , ALA K:208 , GLY K:209 , GLY K:210 , VAL K:236 , GLY K:237 , ARG K:238 , HOH K:513
BINDING SITE FOR RESIDUE 13P K 501
07
BC3
SOFTWARE
PRO L:31 , ASP L:33 , HIS L:34 , LYS L:184 , ALA L:208 , GLY L:209 , GLY L:210 , VAL L:236 , GLY L:237 , ARG L:238 , HOH L:520
BINDING SITE FOR RESIDUE 13P L 501
08
BC4
SOFTWARE
PRO M:31 , ASP M:33 , HIS M:34 , LYS M:184 , ALA M:208 , GLY M:209 , GLY M:210 , VAL M:236 , GLY M:237 , ARG M:238
BINDING SITE FOR RESIDUE 13P M 501
09
BC5
SOFTWARE
PRO N:31 , ASP N:33 , HIS N:34 , LYS N:184 , ALA N:208 , GLY N:209 , GLY N:210 , VAL N:236 , GLY N:237 , ARG N:238
BINDING SITE FOR RESIDUE 13P N 501
10
BC6
SOFTWARE
PRO O:31 , ASP O:33 , HIS O:34 , LYS O:184 , ALA O:208 , GLY O:209 , GLY O:210 , VAL O:236 , GLY O:237 , ARG O:238
BINDING SITE FOR RESIDUE 13P O 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d2qjha_ (A:)
1b: SCOP_d2qjhb_ (B:)
1c: SCOP_d2qjhc_ (C:)
1d: SCOP_d2qjhd_ (D:)
1e: SCOP_d2qjhe_ (E:)
1f: SCOP_d2qjhf_ (F:)
1g: SCOP_d2qjhg_ (G:)
1h: SCOP_d2qjhh_ (H:)
1i: SCOP_d2qjhi_ (I:)
1j: SCOP_d2qjhj_ (J:)
1k: SCOP_d2qjhk_ (K:)
1l: SCOP_d2qjhl_ (L:)
1m: SCOP_d2qjhm_ (M:)
1n: SCOP_d2qjhn_ (N:)
1o: SCOP_d2qjho_ (O:)
1p: SCOP_d2qjhp_ (P:)
1q: SCOP_d2qjhq_ (Q:)
1r: SCOP_d2qjhr_ (R:)
1s: SCOP_d2qjhs_ (S:)
1t: SCOP_d2qjht_ (T:)
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)
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(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
automated matches
(113)
Protein domain
:
automated matches
(113)
Methanocaldococcus jannaschii [TaxId: 2190]
(3)
1a
d2qjha_
A:
1b
d2qjhb_
B:
1c
d2qjhc_
C:
1d
d2qjhd_
D:
1e
d2qjhe_
E:
1f
d2qjhf_
F:
1g
d2qjhg_
G:
1h
d2qjhh_
H:
1i
d2qjhi_
I:
1j
d2qjhj_
J:
1k
d2qjhk_
K:
1l
d2qjhl_
L:
1m
d2qjhm_
M:
1n
d2qjhn_
N:
1o
d2qjho_
O:
1p
d2qjhp_
P:
1q
d2qjhq_
Q:
1r
d2qjhr_
R:
1s
d2qjhs_
S:
1t
d2qjht_
T:
[
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
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Pfam Domains
(1, 20)
Info
all PFAM domains
1a: PFAM_DeoC_2qjhT01 (T:27-243)
1b: PFAM_DeoC_2qjhT02 (T:27-243)
1c: PFAM_DeoC_2qjhT03 (T:27-243)
1d: PFAM_DeoC_2qjhT04 (T:27-243)
1e: PFAM_DeoC_2qjhT05 (T:27-243)
1f: PFAM_DeoC_2qjhT06 (T:27-243)
1g: PFAM_DeoC_2qjhT07 (T:27-243)
1h: PFAM_DeoC_2qjhT08 (T:27-243)
1i: PFAM_DeoC_2qjhT09 (T:27-243)
1j: PFAM_DeoC_2qjhT10 (T:27-243)
1k: PFAM_DeoC_2qjhT11 (T:27-243)
1l: PFAM_DeoC_2qjhT12 (T:27-243)
1m: PFAM_DeoC_2qjhT13 (T:27-243)
1n: PFAM_DeoC_2qjhT14 (T:27-243)
1o: PFAM_DeoC_2qjhT15 (T:27-243)
1p: PFAM_DeoC_2qjhT16 (T:27-243)
1q: PFAM_DeoC_2qjhT17 (T:27-243)
1r: PFAM_DeoC_2qjhT18 (T:27-243)
1s: PFAM_DeoC_2qjhT19 (T:27-243)
1t: PFAM_DeoC_2qjhT20 (T:27-243)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TIM_barrel
(694)
Family
:
DeoC
(21)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(3)
1a
DeoC-2qjhT01
T:27-243
1b
DeoC-2qjhT02
T:27-243
1c
DeoC-2qjhT03
T:27-243
1d
DeoC-2qjhT04
T:27-243
1e
DeoC-2qjhT05
T:27-243
1f
DeoC-2qjhT06
T:27-243
1g
DeoC-2qjhT07
T:27-243
1h
DeoC-2qjhT08
T:27-243
1i
DeoC-2qjhT09
T:27-243
1j
DeoC-2qjhT10
T:27-243
1k
DeoC-2qjhT11
T:27-243
1l
DeoC-2qjhT12
T:27-243
1m
DeoC-2qjhT13
T:27-243
1n
DeoC-2qjhT14
T:27-243
1o
DeoC-2qjhT15
T:27-243
1p
DeoC-2qjhT16
T:27-243
1q
DeoC-2qjhT17
T:27-243
1r
DeoC-2qjhT18
T:27-243
1s
DeoC-2qjhT19
T:27-243
1t
DeoC-2qjhT20
T:27-243
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