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2QIW
Asym. Unit
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Asym.Unit (98 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOENOLPYRUVATE PHOSPHONOMUTASE (NCGL1015, CGL1060) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 AT 1.80 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
05 Jul 07 (Deposition) - 17 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Pep Phosphonomutase (Np_600288. 1) From Corynebacterium Glutamicum Atcc 13032 Kitasato At 1. 80 A Resolution
To Be Published
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Hetero Components
(6, 26)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
4a: HEXAETHYLENE GLYCOL (P6Ga)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
6a: UNKNOWN LIGAND (UNLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
11
Ligand/Ion
GLYCEROL
3
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
4
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
5
SO4
2
Ligand/Ion
SULFATE ION
6
UNL
1
Ligand/Ion
UNKNOWN LIGAND
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:25 , ASN A:110 , TYR A:185 , THR A:233 , GLY A:235 , GOL A:264 , HOH A:275 , HOH A:289 , HOH A:340
BINDING SITE FOR RESIDUE SO4 A 255
02
AC2
SOFTWARE
THR B:25 , ASN B:110 , TYR B:185 , THR B:233 , GLY B:235 , GOL B:258 , HOH B:269 , HOH B:272 , HOH B:286 , HOH B:304
BINDING SITE FOR RESIDUE SO4 B 255
03
AC3
SOFTWARE
GOL B:258
BINDING SITE FOR RESIDUE CL B 256
04
AC4
SOFTWARE
HIS A:48 , ASP A:58 , PRO A:236 , GOL A:264 , HOH A:344
BINDING SITE FOR RESIDUE UNL A 256
05
AC5
SOFTWARE
LEU A:221 , HOH A:508 , VAL B:141 , LYS B:251 , TRP B:253 , HOH B:354 , HOH B:469 , HOH B:510
BINDING SITE FOR RESIDUE P6G B 257
06
AC6
SOFTWARE
GLY A:215 , ASP A:220 , LEU A:221 , HOH A:348 , HOH A:375 , GLY B:252 , TRP B:253
BINDING SITE FOR RESIDUE GOL A 257
07
AC7
SOFTWARE
LEU A:20 , LEU A:21 , VAL A:22 , PHE A:40 , SER A:41 , HOH A:324 , HOH A:326 , GLY B:143
BINDING SITE FOR RESIDUE GOL A 258
08
AC8
SOFTWARE
GLY A:18 , LEU A:20 , ALA A:225 , GLY A:228 , VAL A:229 , ARG A:230 , GLN B:137
BINDING SITE FOR RESIDUE GOL A 259
09
AC9
SOFTWARE
LEU A:34 , GLU A:37 , HOH A:338 , ALA B:244 , ALA B:247 , HOH B:351
BINDING SITE FOR RESIDUE GOL A 260
10
BC1
SOFTWARE
ASP A:140 , GLY A:143 , ASP A:145 , HOH A:345
BINDING SITE FOR RESIDUE GOL A 261
11
BC2
SOFTWARE
GLY A:0 , MSE A:1 , SER A:2 , HOH A:358 , ALA B:125 , GLN B:126 , LYS B:171
BINDING SITE FOR RESIDUE GOL A 262
12
BC3
SOFTWARE
SER A:13 , GLU A:16 , ASP A:145 , ARG A:182 , HOH A:487
BINDING SITE FOR RESIDUE GOL A 263
13
BC4
SOFTWARE
ARG A:151 , LYS A:156 , TYR A:185 , PRO A:236 , SO4 A:255 , UNL A:256 , HOH A:451 , HOH A:513
BINDING SITE FOR RESIDUE GOL A 264
14
BC5
SOFTWARE
ARG B:151 , LYS B:156 , TYR B:185 , PRO B:236 , SO4 B:255 , CL B:256 , HOH B:356 , HOH B:387 , HOH B:457
BINDING SITE FOR RESIDUE GOL B 258
15
BC6
SOFTWARE
SER B:2 , LEU B:4 , LYS B:5 , HOH B:521
BINDING SITE FOR RESIDUE GOL B 259
16
BC7
SOFTWARE
MSE B:166 , GLN B:194 , ARG B:197 , HOH B:369 , HOH B:400
BINDING SITE FOR RESIDUE GOL B 260
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2qiwA01 (A:0-235)
1b: CATH_2qiwB01 (B:0-235)
2a: CATH_2qiwA02 (A:236-254)
2b: CATH_2qiwB02 (B:236-254)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Corynebacterium glutamicum atcc 13032. Organism_taxid: 196627. Strain:dsm 20300, jcm 1318, lmg 3730, ncimb 10025.
(1)
1a
2qiwA01
A:0-235
1b
2qiwB01
B:0-235
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(16)
Corynebacterium glutamicum atcc 13032. Organism_taxid: 196627. Strain:dsm 20300, jcm 1318, lmg 3730, ncimb 10025.
(1)
2a
2qiwA02
A:236-254
2b
2qiwB02
B:236-254
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PEP_mutase_2qiwB01 (B:11-254)
1b: PFAM_PEP_mutase_2qiwB02 (B:11-254)
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Clans
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(
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Organisms
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(
)
Clan
:
PK_TIM
(63)
Family
:
PEP_mutase
(13)
Corynebacterium glutamicum (Brevibacterium flavum)
(1)
1a
PEP_mutase-2qiwB01
B:11-254
1b
PEP_mutase-2qiwB02
B:11-254
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Asymmetric Unit 1
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