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2QI9
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (201 KB)
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(1)
Title
:
ABC-TRANSPORTER BTUCD IN COMPLEX WITH ITS PERIPLASMIC BINDING PROTEIN BTUF
Authors
:
R. N. Hvorup, B. A. Goetz, M. Niederer, K. Hollenstein, E. Perozo, K. P. Locher
Date
:
03 Jul 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,F
Biol. Unit 1: A,B,C,D,F (1x)
Keywords
:
Inner Membrane, Membrane, Transmembrane, Transport, Atp- Binding, Hydrolase, Nucleotide-Binding, Periplasm, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. N. Hvorup, B. A. Goetz, M. Niederer, K. Hollenstein, E. Perozo, K. P. Locher
Asymmetry In The Structure Of The Abc Transporter-Binding Protein Complex Btucd-Btuf.
Science V. 317 1387 2007
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(5, 54)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
2
Ligand/Ion
PENTAETHYLENE GLYCOL
2
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
3
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PO4
2
Ligand/Ion
PHOSPHATE ION
5
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN C:35 , GLY C:36 , ALA C:37 , GLY C:38 , LYS C:39 , SER C:40 , HOH C:903 , HOH C:906
BINDING SITE FOR RESIDUE PO4 C 701
02
AC2
SOFTWARE
ASN D:35 , GLY D:36 , ALA D:37 , GLY D:38 , LYS D:39 , SER D:40 , HOH D:903 , HOH D:906
BINDING SITE FOR RESIDUE PO4 D 701
03
AC3
SOFTWARE
ARG C:217 , ARG C:243
BINDING SITE FOR RESIDUE SO4 C 601
04
AC4
SOFTWARE
ARG C:202 , ARG C:216
BINDING SITE FOR RESIDUE SO4 C 602
05
AC5
SOFTWARE
ARG C:198 , HIS C:199 , ALA C:200 , HIS C:201
BINDING SITE FOR RESIDUE SO4 C 603
06
AC6
SOFTWARE
ARG D:217 , ARG D:243
BINDING SITE FOR RESIDUE SO4 D 601
07
AC7
SOFTWARE
ARG D:202 , ARG D:216
BINDING SITE FOR RESIDUE SO4 D 602
08
AC8
SOFTWARE
ARG D:198 , HIS D:199 , ALA D:200 , HIS D:201
BINDING SITE FOR RESIDUE SO4 D 603
09
AC9
SOFTWARE
GLU C:159 , PRO C:160 , MSE C:161 , ASN C:162 , SER C:163 , LEU C:164 , MSE C:188 , SER C:189 , HIS C:191 , GLU D:159 , ASN D:162 , 1PE D:800
BINDING SITE FOR RESIDUE 1PE C 800
10
BC1
SOFTWARE
GLU C:159 , ASN C:162 , 1PE C:800 , GLU D:159 , PRO D:160 , MSE D:161 , ASN D:162 , SER D:163 , LEU D:164 , MSE D:188 , SER D:189 , HIS D:191
BINDING SITE FOR RESIDUE 1PE D 800
11
BC2
SOFTWARE
LYS C:207 , GLN C:228
BINDING SITE FOR RESIDUE PEG C 500
12
BC3
SOFTWARE
GLN C:61 , TRP C:66 , LYS C:70
BINDING SITE FOR RESIDUE PEG C 501
13
BC4
SOFTWARE
LYS D:207 , LYS D:210 , LEU D:212 , GLN D:228
BINDING SITE FOR RESIDUE PEG D 500
14
BC5
SOFTWARE
GLN D:61 , TRP D:66 , LYS D:70
BINDING SITE FOR RESIDUE PEG D 501
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: FE_B12_PBP (F:25-266)
2: ABC_TRANSPORTER_1 (C:127-141,D:127-141)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FE_B12_PBP
PS50983
Iron siderophore/cobalamin periplasmic-binding domain profile.
BTUF_ECOLI
25-266
1
F:25-266
2
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
BTUD_ECOLI
127-141
2
C:127-141
D:127-141
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 5)
Info
All SCOP Domains
1a: SCOP_d2qi9f_ (F:)
2a: SCOP_d2qi9c_ (C:)
2b: SCOP_d2qi9d_ (D:)
3a: SCOP_d2qi9a_ (A:)
3b: SCOP_d2qi9b_ (B:)
View:
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(
)
(
)
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)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
Helical backbone metal receptor
(102)
Family
:
TroA-like
(17)
Protein domain
:
Vitamin B12 binding protein BtuF
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d2qi9f_
F:
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
ABC transporter involved in vitamin B12 uptake, BtuD
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d2qi9c_
C:
2b
d2qi9d_
D:
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
ABC transporter involved in vitamin B12 uptake, BtuC
(2)
Superfamily
:
ABC transporter involved in vitamin B12 uptake, BtuC
(2)
Family
:
ABC transporter involved in vitamin B12 uptake, BtuC
(2)
Protein domain
:
ABC transporter involved in vitamin B12 uptake, BtuC
(2)
Escherichia coli [TaxId: 562]
(2)
3a
d2qi9a_
A:
3b
d2qi9b_
B:
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2qi9F02 (F:141-266)
1b: CATH_2qi9F01 (F:22-140)
2a: CATH_2qi9C00 (C:2-249)
2b: CATH_2qi9D00 (D:2-249)
3a: CATH_2qi9A00 (A:2-324)
3b: CATH_2qi9B00 (B:2-324)
View:
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Classes
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(
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nitrogenase molybdenum iron protein domain
(45)
Escherichia coli. Organism_taxid: 562.
(7)
1a
2qi9F02
F:141-266
1b
2qi9F01
F:22-140
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 562.
(54)
2a
2qi9C00
C:2-249
2b
2qi9D00
D:2-249
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
ABC transporter involved in vitamin B12 uptake, BtuC
(3)
Homologous Superfamily
:
ABC transporter involved in vitamin B12 uptake, BtuC
(3)
Escherichia coli. Organism_taxid: 562.
(2)
3a
2qi9A00
A:2-324
3b
2qi9B00
B:2-324
[
close CATH info
]
Pfam Domains
(3, 5)
Info
all PFAM domains
1a: PFAM_FecCD_2qi9B01 (B:22-323)
1b: PFAM_FecCD_2qi9B02 (B:22-323)
2a: PFAM_ABC_tran_2qi9D01 (D:40-162)
2b: PFAM_ABC_tran_2qi9D02 (D:40-162)
3a: PFAM_Peripla_BP_2_2qi9F01 (F:26-231)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Membrane_trans
(3)
Family
:
FecCD
(3)
Escherichia coli (strain K12)
(2)
1a
FecCD-2qi9B01
B:22-323
1b
FecCD-2qi9B02
B:22-323
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Escherichia coli (strain K12)
(10)
2a
ABC_tran-2qi9D01
D:40-162
2b
ABC_tran-2qi9D02
D:40-162
Clan
:
no clan defined [family: Peripla_BP_2]
(13)
Family
:
Peripla_BP_2
(13)
Escherichia coli (strain K12)
(5)
3a
Peripla_BP_2-2qi9F01
F:26-231
[
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]
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Asym.Unit (210 KB)
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