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2QI8
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DRUG RESISTANT SRC KINASE DOMAIN
Authors
:
A. Michalczyk, H. B. Rode, C. Gruetter, D. Rauh
Date
:
03 Jul 07 (Deposition) - 18 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.32
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Src Kinase Domain; Drug Resistance, Signaling Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Michalczyk, S. Kluter, H. B. Rode, J. R. Simard, C. Grutter, M. Rabiller, D. Rauh
Structural Insights Into How Irreversible Inhibitors Can Overcome Drug Resistance In Egfr.
Bioorg. Med. Chem. V. 16 3482 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:483 , PRO A:484 , GLU A:486 , CYS A:487
BINDING SITE FOR RESIDUE GOL A 100
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:273-295,B:273-295)
2: PROTEIN_KINASE_TYR (A:382-394,B:382-394)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
SRC_CHICK
273-295
2
A:273-295
B:273-295
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
SRC_CHICK
382-394
2
A:382-394
B:382-394
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Exons
(6, 12)
Info
All Exons
Exon 1.6 (A:257-284 | B:258-284 (gaps))
Exon 1.7 (A:284-344 (gaps) | B:284-344 (gaps...)
Exon 1.8 (A:344-369 | B:344-369)
Exon 1.9 (A:370-410 | B:370-408)
Exon 1.10 (A:425-465 | B:425-465)
Exon 1.11b (A:465-533 | B:465-533)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
6: Boundary 1.10/1.11b
7: Boundary 1.11b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000006127
1
ENSGALE00000040081
chr20:
5036245-5036485
241
SRC_CHICK
1-81
81
0
-
-
1.2
ENSGALT00000006127
2
ENSGALE00000040077
chr20:
5036656-5036755
100
SRC_CHICK
81-114
34
0
-
-
1.3
ENSGALT00000006127
3
ENSGALE00000040071
chr20:
5039208-5039306
99
SRC_CHICK
114-147
34
0
-
-
1.4
ENSGALT00000006127
4
ENSGALE00000040076
chr20:
5039773-5039876
104
SRC_CHICK
147-182
36
0
-
-
1.5
ENSGALT00000006127
5
ENSGALE00000040075
chr20:
5040899-5041048
150
SRC_CHICK
182-232
51
0
-
-
1.6
ENSGALT00000006127
6
ENSGALE00000040079
chr20:
5041450-5041605
156
SRC_CHICK
232-284
53
2
A:257-284
B:258-284 (gaps)
28
27
1.7
ENSGALT00000006127
7
ENSGALE00000040078
chr20:
5041714-5041893
180
SRC_CHICK
284-344
61
2
A:284-344 (gaps)
B:284-344 (gaps)
61
61
1.8
ENSGALT00000006127
8
ENSGALE00000040074
chr20:
5041971-5042047
77
SRC_CHICK
344-369
26
2
A:344-369
B:344-369
26
26
1.9
ENSGALT00000006127
9
ENSGALE00000040080
chr20:
5042182-5042335
154
SRC_CHICK
370-421
52
2
A:370-410
B:370-408
41
39
1.10
ENSGALT00000006127
10
ENSGALE00000040072
chr20:
5042454-5042585
132
SRC_CHICK
421-465
45
2
A:425-465
B:425-465
41
41
1.11b
ENSGALT00000006127
11b
ENSGALE00000040073
chr20:
5042664-5042872
209
SRC_CHICK
465-533
69
2
A:465-533
B:465-533
69
69
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qi8a_ (A:)
1b: SCOP_d2qi8b_ (B:)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
c-src tyrosine kinase
(46)
Chicken (Gallus gallus) [TaxId: 9031]
(34)
1a
d2qi8a_
A:
1b
d2qi8b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2qi8A01 (A:257-340)
1b: CATH_2qi8B01 (B:258-340)
2a: CATH_2qi8A02 (A:341-526)
2b: CATH_2qi8B02 (B:341-526)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Chicken (Gallus gallus)
(24)
1a
2qi8A01
A:257-340
1b
2qi8B01
B:258-340
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Chicken (Gallus gallus)
(24)
2a
2qi8A02
A:341-526
2b
2qi8B02
B:341-526
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_2qi8B01 (B:267-516)
1b: PFAM_Pkinase_Tyr_2qi8B02 (B:267-516)
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)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Gallus gallus (Chicken)
(9)
1a
Pkinase_Tyr-2qi8B01
B:267-516
1b
Pkinase_Tyr-2qi8B02
B:267-516
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Asym.Unit (91 KB)
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