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2QFR
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (153 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RED KIDNEY BEAN PURPLE ACID PHOSPHATASE WITH BOUND SULFATE
Authors
:
L. W. Guddat, G. Schenk, L. R. Gahan, T. W. Elliot, E. Leung
Date
:
27 Jun 07 (Deposition) - 14 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Binuclear Metal Centre, Substrate Analog, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Schenk, T. W. Elliott, E. Leung, L. E. Carrington, N. Mitic, L. R. Gahan, L. W. Guddat
Crystal Structures Of A Purple Acid Phosphatase, Representing Different Steps Of This Enzyme'S Catalytic Cycle.
Bmc Struct. Biol. V. 8 6 2008
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
2
Ligand/Ion
FE (III) ION
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
SO4
4
Ligand/Ion
SULFATE ION
5
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:81 , ASN A:173 , HOH A:548 , HOH A:557 , TYR B:24 , ASP B:50
BINDING SITE FOR RESIDUE NDG A 450
02
AC2
SOFTWARE
ASP A:16 , ASN A:143 , SER A:147 , ARG A:188 , HOH A:566
BINDING SITE FOR RESIDUE NAG A 451
03
AC3
SOFTWARE
LYS A:395 , ASN A:396 , THR A:398 , HIS A:399 , HOH A:461 , HOH A:550 , HOH A:568
BINDING SITE FOR RESIDUE NAG A 452
04
AC4
SOFTWARE
GLU A:51 , ARG A:108 , ASN A:109 , HOH A:530 , HOH A:635
BINDING SITE FOR RESIDUE NDG A 453
05
AC5
SOFTWARE
TYR A:24 , GLU A:51 , ASN B:81 , ASN B:173 , HOH B:464 , HOH B:550
BINDING SITE FOR RESIDUE NAG B 450
06
AC6
SOFTWARE
ASP B:16 , ASN B:143 , SER B:147 , HOH B:539 , HOH B:642
BINDING SITE FOR RESIDUE NAG B 451
07
AC7
SOFTWARE
ASN B:396 , HIS B:399 , HOH B:462 , HOH B:475
BINDING SITE FOR RESIDUE NAG B 452
08
AC8
SOFTWARE
GLU B:51 , ARG B:108 , ASN B:109 , HOH B:482
BINDING SITE FOR RESIDUE NAG B 453
09
AC9
SOFTWARE
ASP A:135 , ASP A:164 , TYR A:167 , HIS A:325 , ZN A:434 , HOH A:454
BINDING SITE FOR RESIDUE FE A 433
10
BC1
SOFTWARE
ASP A:135 , ASP A:164 , ASN A:201 , HIS A:286 , HIS A:323 , FE A:433 , HOH A:454
BINDING SITE FOR RESIDUE ZN A 434
11
BC2
SOFTWARE
ASN A:201 , HIS A:202 , HIS A:295 , HIS A:296 , HIS A:323 , HIS A:325 , HOH A:454
BINDING SITE FOR RESIDUE SO4 A 435
12
BC3
SOFTWARE
ARG A:258 , TYR A:263 , LYS A:267 , HOH A:499 , HOH A:608
BINDING SITE FOR RESIDUE SO4 A 437
13
BC4
SOFTWARE
ASP B:135 , ASP B:164 , TYR B:167 , HIS B:325 , ZN B:434 , HOH B:454
BINDING SITE FOR RESIDUE FE B 433
14
BC5
SOFTWARE
ASP B:135 , ASP B:164 , ASN B:201 , HIS B:286 , HIS B:323 , FE B:433 , SO4 B:435 , HOH B:454
BINDING SITE FOR RESIDUE ZN B 434
15
BC6
SOFTWARE
ASN B:201 , HIS B:202 , HIS B:295 , HIS B:296 , ZN B:434 , HOH B:454
BINDING SITE FOR RESIDUE SO4 B 435
16
BC7
SOFTWARE
ARG B:258 , TYR B:263 , LYS B:267
BINDING SITE FOR RESIDUE SO4 B 437
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2qfra1 (A:9-120)
1b: SCOP_d2qfrb1 (B:9-120)
2a: SCOP_d2qfra2 (A:121-432)
2b: SCOP_d2qfrb2 (B:121-432)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Purple acid phosphatase, N-terminal domain
(9)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(5)
1a
d2qfra1
A:9-120
1b
d2qfrb1
B:9-120
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Purple acid phosphatase-like
(14)
Protein domain
:
automated matches
(7)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(5)
2a
d2qfra2
A:121-432
2b
d2qfrb2
B:121-432
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2qfrA02 (A:123-432)
1b: CATH_2qfrB02 (B:123-432)
2a: CATH_2qfrA01 (A:26-122)
2b: CATH_2qfrB01 (B:26-122)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Kidney bean (Phaseolus vulgaris)
(2)
1a
2qfrA02
A:123-432
1b
2qfrB02
B:123-432
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Purple acid phosphatase, domain1
(6)
Kidney bean (Phaseolus vulgaris)
(2)
2a
2qfrA01
A:26-122
2b
2qfrB01
B:26-122
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Metallophos_2qfrB01 (B:101-300)
1b: PFAM_Metallophos_2qfrB02 (B:101-300)
2a: PFAM_Metallophos_C_2qfrB03 (B:325-391)
2b: PFAM_Metallophos_C_2qfrB04 (B:325-391)
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Clans
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Families
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)
Organisms
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)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Phaseolus vulgaris (Kidney bean) (French bean)
(4)
1a
Metallophos-2qfrB01
B:101-300
1b
Metallophos-2qfrB02
B:101-300
Clan
:
no clan defined [family: Metallophos_C]
(5)
Family
:
Metallophos_C
(5)
Phaseolus vulgaris (Kidney bean) (French bean)
(4)
2a
Metallophos_C-2qfrB03
B:325-391
2b
Metallophos_C-2qfrB04
B:325-391
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