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2QFA
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (97 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SURVIVIN-BOREALIN-INCENP CORE COMPLEX
Authors
:
A. A. Jeyaprakash, U. R. Klein, D. Lindner, J. Ebert, E. A. Nigg, E. Conti
Date
:
27 Jun 07 (Deposition) - 06 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Three-Helical-Bundle, Long Helix, Protein Complex, Alternative Splicing, Apoptosis, Cell Cycle, Cell Division, Centromere, Chromosomal Protein, Cytoplasm, Metal-Binding, Mitosis, Nucleus, Phosphorylation, Polymorphism, Protease Inhibitor, Thiol Protease Inhibitor, Zinc, Coiled Coil, Microtubule, Cell Cycle/Cell Cycle/Cell Cycle Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Jeyaprakash, U. R. Klein, D. Lindner, J. Ebert, E. A. Nigg, E. Conti
Structure Of A Survivin-Borealin-Incenp Core Complex Reveals How Chromosomal Passengers Travel Together.
Cell(Cambridge, Mass. ) V. 131 271 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:57 , CYS A:60 , HIS A:77 , CYS A:84
BINDING SITE FOR RESIDUE ZN A 143
2
AC2
SOFTWARE
ARG A:18 , GLU A:40 , PHE A:86 , VAL A:89 , GLN A:92 , PHE A:93
BINDING SITE FOR RESIDUE MES A 975
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021071 (K129E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021071
K
129
E
BIRC5_HUMAN
Polymorphism
2071214
A
K
129
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_2 (A:18-88)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_2
PS50143
BIR repeat profile.
BIRC5_HUMAN
18-88
1
A:18-88
[
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Exons
(9, 9)
Info
All Exons
Exon 1.1a (A:5-37)
Exon 1.2 (A:38-74)
Exon 1.4 (A:74-113)
Exon 1.6 (A:114-141)
Exon 2.1a (B:15-32)
Exon 2.2 (B:32-75)
Exon 2.3 (B:75-76)
Exon 3.2 (C:3-47)
Exon 3.3 (C:47-47)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.4
04: Boundary 1.4/1.6
05: Boundary 1.6/-
06: Boundary -/2.1a
07: Boundary 2.1a/2.2
08: Boundary 2.2/2.3
09: Boundary 2.3/2.4
10: Boundary 3.1a/3.2
11: Boundary 3.2/3.3
12: Boundary 3.3/3.4b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000350051
1a
ENSE00001305879
chr17:
76210277-76210508
232
BIRC5_HUMAN
1-37
37
1
A:5-37
33
1.2
ENST00000350051
2
ENSE00001118173
chr17:
76210761-76210870
110
BIRC5_HUMAN
38-74
37
1
A:38-74
37
1.4
ENST00000350051
4
ENSE00000905203
chr17:
76212745-76212862
118
BIRC5_HUMAN
74-113
40
1
A:74-113
40
1.6
ENST00000350051
6
ENSE00001706950
chr17:
76219546-76221715
2170
BIRC5_HUMAN
114-142
29
1
A:114-141
28
2.1a
ENST00000373055
1a
ENSE00001459426
chr1:
38158090-38158456
367
BOREA_HUMAN
1-32
32
1
B:15-32
18
2.2
ENST00000373055
2
ENSE00000916824
chr1:
38158577-38158705
129
BOREA_HUMAN
32-75
44
1
B:32-75
44
2.3
ENST00000373055
3
ENSE00001038181
chr1:
38161582-38161622
41
BOREA_HUMAN
75-88
14
1
B:75-76
2
2.4
ENST00000373055
4
ENSE00000916825
chr1:
38164577-38164649
73
BOREA_HUMAN
89-113
25
0
-
-
2.5
ENST00000373055
5
ENSE00000916826
chr1:
38166108-38166193
86
BOREA_HUMAN
113-141
29
0
-
-
2.6
ENST00000373055
6
ENSE00000916827
chr1:
38167426-38167490
65
BOREA_HUMAN
142-163
22
0
-
-
2.7
ENST00000373055
7
ENSE00000916828
chr1:
38168924-38169019
96
BOREA_HUMAN
163-195
33
0
-
-
2.8
ENST00000373055
8
ENSE00001199740
chr1:
38171113-38171239
127
BOREA_HUMAN
195-237
43
0
-
-
2.9
ENST00000373055
9
ENSE00000916830
chr1:
38172650-38172736
87
BOREA_HUMAN
238-266
29
0
-
-
2.10b
ENST00000373055
10b
ENSE00001459421
chr1:
38173994-38175391
1398
BOREA_HUMAN
267-280
14
0
-
-
3.1a
ENST00000394818
1a
ENSE00001211993
chr11:
61891445-61891635
191
INCE_HUMAN
-
0
0
-
-
3.2
ENST00000394818
2
ENSE00002147970
chr11:
61895623-61895773
151
INCE_HUMAN
1-47
47
1
C:3-47
45
3.3
ENST00000394818
3
ENSE00001140657
chr11:
61896242-61896355
114
INCE_HUMAN
47-85
39
1
C:47-47
1
3.4b
ENST00000394818
4b
ENSE00000990915
chr11:
61897254-61898062
809
INCE_HUMAN
85-355
271
0
-
-
3.5a
ENST00000394818
5a
ENSE00001140643
chr11:
61905304-61905355
52
INCE_HUMAN
355-372
18
0
-
-
3.6
ENST00000394818
6
ENSE00001140636
chr11:
61906185-61906242
58
INCE_HUMAN
372-391
20
0
-
-
3.7
ENST00000394818
7
ENSE00000990918
chr11:
61906360-61906477
118
INCE_HUMAN
392-431
40
0
-
-
3.8
ENST00000394818
8
ENSE00000990919
chr11:
61907706-61907757
52
INCE_HUMAN
431-448
18
0
-
-
3.9
ENST00000394818
9
ENSE00000990920
chr11:
61908176-61908293
118
INCE_HUMAN
448-487
40
0
-
-
3.10
ENST00000394818
10
ENSE00001195803
chr11:
61908385-61908516
132
INCE_HUMAN
488-531
44
0
-
-
3.11a
ENST00000394818
11a
ENSE00001624284
chr11:
61908972-61908983
12
INCE_HUMAN
532-535
4
0
-
-
3.12
ENST00000394818
12
ENSE00000990922
chr11:
61912454-61912563
110
INCE_HUMAN
536-572
37
0
-
-
3.13
ENST00000394818
13
ENSE00000990923
chr11:
61912641-61912761
121
INCE_HUMAN
572-612
41
0
-
-
3.14
ENST00000394818
14
ENSE00001195786
chr11:
61913101-61913223
123
INCE_HUMAN
613-653
41
0
-
-
3.15
ENST00000394818
15
ENSE00001195780
chr11:
61914130-61914374
245
INCE_HUMAN
654-735
82
0
-
-
3.16
ENST00000394818
16
ENSE00001195774
chr11:
61915948-61916026
79
INCE_HUMAN
735-761
27
0
-
-
3.17
ENST00000394818
17
ENSE00000990924
chr11:
61916211-61916318
108
INCE_HUMAN
762-797
36
0
-
-
3.18
ENST00000394818
18
ENSE00001195763
chr11:
61917529-61917679
151
INCE_HUMAN
798-848
51
0
-
-
3.19b
ENST00000394818
19b
ENSE00001195845
chr11:
61919234-61920453
1220
INCE_HUMAN
848-918
71
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2qfaa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
Anti-apoptotic protein survivin
(10)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2qfaa_
A:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2qfaA00 (A:5-141)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Homologous Superfamily
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Human (Homo sapiens)
(35)
1a
2qfaA00
A:5-141
[
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]
Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_BIR_2qfaA01 (A:18-88)
2a: PFAM_INCENP_N_2qfaC01 (C:5-42)
3a: PFAM_Nbl1_Borealin_N_2qfaB01 (B:19-76)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
BIR-like
(25)
Family
:
BIR
(25)
Homo sapiens (Human)
(24)
1a
BIR-2qfaA01
A:18-88
Clan
:
no clan defined [family: INCENP_N]
(1)
Family
:
INCENP_N
(1)
Homo sapiens (Human)
(1)
2a
INCENP_N-2qfaC01
C:5-42
Clan
:
no clan defined [family: Nbl1_Borealin_N]
(3)
Family
:
Nbl1_Borealin_N
(3)
Homo sapiens (Human)
(3)
3a
Nbl1_Borealin_N-2qfaB01
B:19-76
[
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