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2QE0
Biol. Unit 1
Info
Asym.Unit (329 KB)
Biol.Unit 1 (321 KB)
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(1)
Title
:
THIOACYLENZYME INTERMEDIATE OF GAPN FROM S. MUTANS, NEW DATA INTEGRATION AND REFINEMENT.
Authors
:
C. Corbier, C. Didierjean, G. Bricogne, G. Branlant, K. D'Ambrosio, C.
Date
:
22 Jun 07 (Deposition) - 25 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Aldh, Gapn, Ternary Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. D'Ambrosio, A. Pailot, F. Talfournier, C. Didierjean, E. Benedetti, A. Aubry, G. Branlant, C. Corbier
The First Crystal Structure Of A Thioacylenzyme Intermediat In The Aldh Family: New Coenzyme Conformation And Relevance To Catalysis
Biochemistry V. 45 2978 2006
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GLYCERALDEHYDE-3-PHOSPHATE (G3Ha)
1b: GLYCERALDEHYDE-3-PHOSPHATE (G3Hb)
1c: GLYCERALDEHYDE-3-PHOSPHATE (G3Hc)
1d: GLYCERALDEHYDE-3-PHOSPHATE (G3Hd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
G3H
4
Ligand/Ion
GLYCERALDEHYDE-3-PHOSPHATE
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:103 , ASN A:154 , TYR A:155 , ARG A:283 , CYS A:284 , THR A:285 , GLN A:436 , ARG A:437 , HOH A:1615 , HOH A:1737
BINDING SITE FOR RESIDUE G3H A 800
2
AC2
SOFTWARE
ILE A:150 , SER A:151 , PRO A:152 , PHE A:153 , LYS A:177 , PRO A:178 , PRO A:179 , THR A:180 , GLY A:208 , ARG A:209 , GLY A:210 , GLY A:214 , ASP A:215 , PHE A:228 , THR A:229 , GLY A:230 , SER A:231 , ILE A:234 , GLY A:252 , CYS A:284 , GLU A:377 , PHE A:379 , HOH A:1492 , HOH A:1636 , HOH A:1802 , HOH A:1803 , HOH A:1805 , HOH A:1815
BINDING SITE FOR RESIDUE NAP A 1476
3
AC3
SOFTWARE
ARG B:103 , ASN B:154 , TYR B:155 , ARG B:283 , CYS B:284 , THR B:285 , GLN B:436 , ARG B:437 , HOH B:2562 , HOH B:2713
BINDING SITE FOR RESIDUE G3H B 800
4
AC4
SOFTWARE
ILE B:150 , SER B:151 , PRO B:152 , PHE B:153 , LYS B:177 , PRO B:178 , PRO B:179 , THR B:180 , GLY B:208 , GLY B:210 , GLY B:214 , ASP B:215 , VAL B:218 , PHE B:228 , THR B:229 , GLY B:230 , SER B:231 , ILE B:234 , GLY B:252 , CYS B:284 , TYR B:333 , GLU B:377 , PHE B:379 , HOH B:2538 , HOH B:2623 , HOH B:2748
BINDING SITE FOR RESIDUE NAP B 2476
5
AC5
SOFTWARE
ARG C:103 , ASN C:154 , TYR C:155 , ARG C:283 , CYS C:284 , THR C:285 , GLN C:436 , ARG C:437 , HOH C:3621
BINDING SITE FOR RESIDUE G3H C 800
6
AC6
SOFTWARE
ILE C:150 , SER C:151 , PRO C:152 , PHE C:153 , LYS C:177 , PRO C:178 , PRO C:179 , THR C:180 , GLY C:208 , ARG C:209 , GLY C:210 , GLY C:214 , ASP C:215 , PHE C:228 , GLY C:230 , SER C:231 , ILE C:234 , ARG C:237 , GLY C:252 , CYS C:284 , TYR C:333 , GLU C:377 , PHE C:379 , HOH C:3527 , HOH C:3549 , HOH C:3581 , HOH C:3656 , HOH C:3694 , HOH C:3825 , HOH C:3834 , HOH C:3851 , HOH C:3866
BINDING SITE FOR RESIDUE NAP C 3476
7
AC7
SOFTWARE
ARG D:103 , ASN D:154 , TYR D:155 , ARG D:283 , CYS D:284 , THR D:285 , GLN D:436 , ARG D:437 , HOH D:4570
BINDING SITE FOR RESIDUE G3H D 800
8
AC8
SOFTWARE
ILE D:150 , SER D:151 , PRO D:152 , PHE D:153 , LYS D:177 , PRO D:178 , PRO D:179 , THR D:180 , GLY D:208 , ARG D:209 , GLY D:210 , GLY D:214 , ASP D:215 , PHE D:228 , THR D:229 , GLY D:230 , SER D:231 , ILE D:234 , ARG D:237 , GLY D:252 , CYS D:284 , TYR D:333 , GLU D:377 , PHE D:379 , HOH D:4478 , HOH D:4618 , HOH D:4650 , HOH D:4751 , HOH D:4757 , HOH D:4774
BINDING SITE FOR RESIDUE NAP D 4476
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_CYS (A:277-288,B:277-288,C:277-288,D:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
GAPN_STRMU
277-288
4
A:277-288
B:277-288
C:277-288
D:277-288
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2qe0a_ (A:)
1b: SCOP_d2qe0b_ (B:)
1c: SCOP_d2qe0c_ (C:)
1d: SCOP_d2qe0d_ (D:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
automated matches
(24)
Streptococcus mutans [TaxId: 1309]
(3)
1a
d2qe0a_
A:
1b
d2qe0b_
B:
1c
d2qe0c_
C:
1d
d2qe0d_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2qe0A01 (A:2-251,A:451-474)
1b: CATH_2qe0B01 (B:2-251,B:451-474)
1c: CATH_2qe0C01 (C:2-251,C:451-474)
1d: CATH_2qe0D01 (D:2-251,D:451-474)
2a: CATH_2qe0A02 (A:254-446)
2b: CATH_2qe0B02 (B:254-446)
2c: CATH_2qe0C02 (C:254-446)
2d: CATH_2qe0D02 (D:254-446)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Streptococcus mutans. Organism_taxid: 1309.
(1)
1a
2qe0A01
A:2-251,A:451-474
1b
2qe0B01
B:2-251,B:451-474
1c
2qe0C01
C:2-251,C:451-474
1d
2qe0D01
D:2-251,D:451-474
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Streptococcus mutans. Organism_taxid: 1309.
(1)
2a
2qe0A02
A:254-446
2b
2qe0B02
B:254-446
2c
2qe0C02
C:254-446
2d
2qe0D02
D:254-446
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aldedh_2qe0D01 (D:13-470)
1b: PFAM_Aldedh_2qe0D02 (D:13-470)
1c: PFAM_Aldedh_2qe0D03 (D:13-470)
1d: PFAM_Aldedh_2qe0D04 (D:13-470)
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Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Streptococcus mutans
(2)
1a
Aldedh-2qe0D01
D:13-470
1b
Aldedh-2qe0D02
D:13-470
1c
Aldedh-2qe0D03
D:13-470
1d
Aldedh-2qe0D04
D:13-470
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Asymmetric Unit 1
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