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2QDG
Asym. Unit
Info
Asym.Unit (273 KB)
Biol.Unit 1 (264 KB)
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(1)
Title
:
FRUCTOSE-1,6-BISPHOSPHATE SCHIFF BASE INTERMEDIATE IN FBP ALDOLASE FROM LEISHMANIA MEXICANA
Authors
:
J. Lafrance-Vanasse, J. Sygusch
Date
:
20 Jun 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta Barrel, Aldolase, Leishmania, Fructose-1, 6-Bisphosphate, C- Teminal Tail, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Lafrance-Vanasse, J. Sygusch
Carboxy-Terminus Recruitment Induced By Substrate Binding I Eukaryotic Fructose Bis-Phosphate Aldolases
Biochemistry V. 46 9533 2007
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR F... (2FPa)
1b: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR F... (2FPb)
1c: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR F... (2FPc)
1d: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR F... (2FPd)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2FP
4
Ligand/Ion
1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
2
PO4
8
Ligand/Ion
PHOSPHATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:158 , GLU A:197 , GLU A:199 , GLY A:282 , ARG A:313 , 2FP A:400
BINDING SITE FOR RESIDUE PO4 A 2001
02
AC2
SOFTWARE
LYS A:116 , ASP A:118 , GLY A:120 , ARG A:158 , 2FP A:400 , HOH A:2212 , HOH A:2213 , HOH A:2214
BINDING SITE FOR RESIDUE PO4 A 2002
03
AC3
SOFTWARE
ARG B:158 , GLU B:197 , GLU B:199 , LEU B:280 , GLY B:282 , ARG B:313 , 2FP B:400 , HOH B:2252
BINDING SITE FOR RESIDUE PO4 B 2003
04
AC4
SOFTWARE
SER B:45 , LYS B:116 , ASP B:118 , GLY B:120 , ARG B:158 , 2FP B:400 , HOH B:2005 , HOH B:2301
BINDING SITE FOR RESIDUE PO4 B 2004
05
AC5
SOFTWARE
ARG C:158 , GLU C:197 , GLU C:199 , LEU C:280 , GLY C:282 , ARG C:313 , 2FP C:400
BINDING SITE FOR RESIDUE PO4 C 2005
06
AC6
SOFTWARE
LYS C:116 , ASP C:118 , GLY C:120 , ARG C:158 , 2FP C:400 , HOH C:2030 , HOH C:2134 , HOH C:2207 , HOH C:2348 , HOH C:2349
BINDING SITE FOR RESIDUE PO4 C 2006
07
AC7
SOFTWARE
ARG D:158 , GLU D:197 , GLU D:199 , GLY D:282 , ARG D:313 , 2FP D:400 , HOH D:2279
BINDING SITE FOR RESIDUE PO4 D 2007
08
AC8
SOFTWARE
LYS D:116 , ASP D:118 , GLY D:120 , ARG D:158 , 2FP D:400 , HOH D:2097 , HOH D:2115 , HOH D:2268 , HOH D:2269
BINDING SITE FOR RESIDUE PO4 D 2008
09
AC9
SOFTWARE
ALA A:41 , ASP A:43 , GLU A:44 , SER A:45 , SER A:48 , LYS A:156 , ARG A:158 , GLU A:197 , LYS A:239 , SER A:281 , GLY A:282 , SER A:310 , TYR A:311 , ALA A:312 , ARG A:313 , PO4 A:2001 , PO4 A:2002 , HOH A:2003
BINDING SITE FOR RESIDUE 2FP A 400
10
BC1
SOFTWARE
ALA B:41 , ASP B:43 , SER B:45 , SER B:48 , LYS B:156 , ARG B:158 , GLU B:197 , LYS B:239 , LEU B:280 , SER B:281 , GLY B:282 , SER B:310 , TYR B:311 , ALA B:312 , ARG B:313 , PO4 B:2003 , PO4 B:2004
BINDING SITE FOR RESIDUE 2FP B 400
11
BC2
SOFTWARE
ALA C:41 , ASP C:43 , GLU C:44 , SER C:45 , SER C:48 , LYS C:156 , ARG C:158 , GLU C:197 , LYS C:239 , LEU C:280 , SER C:281 , GLY C:282 , SER C:310 , TYR C:311 , ALA C:312 , ARG C:313 , PO4 C:2005 , PO4 C:2006 , HOH C:2007
BINDING SITE FOR RESIDUE 2FP C 400
12
BC3
SOFTWARE
ALA D:41 , ASP D:43 , GLU D:44 , SER D:45 , SER D:48 , LYS D:156 , ARG D:158 , GLU D:197 , LYS D:239 , SER D:281 , GLY D:282 , SER D:310 , TYR D:311 , ALA D:312 , ARG D:313 , PO4 D:2007 , PO4 D:2008 , HOH D:2280 , HOH D:2340
BINDING SITE FOR RESIDUE 2FP D 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2qdga_ (A:)
1b: SCOP_d2qdgc_ (C:)
1c: SCOP_d2qdgd_ (D:)
1d: SCOP_d2qdgb_ (B:)
View:
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)
(
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
automated matches
(113)
Protein domain
:
automated matches
(113)
Trypanosome (Leishmania mexicana) [TaxId: 5665]
(3)
1a
d2qdga_
A:
1b
d2qdgc_
C:
1c
d2qdgd_
D:
1d
d2qdgb_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2qdgC00 (C:1-358)
1b: CATH_2qdgA00 (A:1-366)
1c: CATH_2qdgB00 (B:1-366)
1d: CATH_2qdgD00 (D:1-358)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Leishmania mexicana. Organism_taxid: 5665.
(3)
1a
2qdgC00
C:1-358
1b
2qdgA00
A:1-366
1c
2qdgB00
B:1-366
1d
2qdgD00
D:1-358
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glycolytic_2qdgD01 (D:24-358)
1b: PFAM_Glycolytic_2qdgD02 (D:24-358)
1c: PFAM_Glycolytic_2qdgD03 (D:24-358)
1d: PFAM_Glycolytic_2qdgD04 (D:24-358)
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Clan
:
no clan defined [family: Glycolytic]
(21)
Family
:
Glycolytic
(21)
Leishmania mexicana
(3)
1a
Glycolytic-2qdgD01
D:24-358
1b
Glycolytic-2qdgD02
D:24-358
1c
Glycolytic-2qdgD03
D:24-358
1d
Glycolytic-2qdgD04
D:24-358
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Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (273 KB)
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