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Getting 'Exon' information from database.
2QCJ
Asym. Unit
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Asym.Unit (94 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (46 KB)
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(1)
Title
:
NATIVE STRUCTURE OF LYP
Authors
:
J. P. Sun, X. Yu, Z. Y. Zhang
Date
:
19 Jun 07 (Deposition) - 20 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ptpn22, Lyp, Ptp, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Yu, J. P. Sun, Y. T. He, B. Zhou, S. J. Liu, Z. Y. Zhang
Crystal Structure Of Lyp And Its Complex With A Selective Inhibitor
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_072629 (S201F, chain A/B, )
2: VAR_072630 (R263Q, chain A/B, )
3: VAR_072631 (R266W, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_072629
S
201
F
PTN22_HUMAN
Polymorphism
7416347
A/B
S
201
F
2
UniProt
VAR_072630
R
263
Q
PTN22_HUMAN
Polymorphism
33996649
A/B
R
263
Q
3
UniProt
VAR_072631
R
266
W
PTN22_HUMAN
Polymorphism
72650670
A/B
R
266
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:24-289,B:24-289)
2: TYR_PHOSPHATASE_2 (A:203-280,B:203-280)
3: TYR_PHOSPHATASE_1 (A:225-235,B:225-235)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTN22_HUMAN
24-289
2
A:24-289
B:24-289
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTN22_HUMAN
203-280
2
A:203-280
B:203-280
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTN22_HUMAN
225-235
2
A:225-235
B:225-235
[
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]
Exons
(11, 22)
Info
All Exons
Exon 1.1a (A:7-29 | B:7-29)
Exon 1.3 (A:30-66 | B:30-66)
Exon 1.4b (A:66-91 | B:66-91)
Exon 1.5 (A:92-123 | B:92-123)
Exon 1.6 (A:124-136 | B:124-136)
Exon 1.8 (A:137-160 | B:137-160)
Exon 1.9 (A:161-180 | B:161-180)
Exon 1.10 (A:181-228 (gaps) | B:181-228 (gaps...)
Exon 1.11 (A:228-250 | B:228-250)
Exon 1.12 (A:251-276 | B:251-276)
Exon 1.13 (A:277-290 | B:277-290)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3
03: Boundary 1.3/1.4b
04: Boundary 1.4b/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000359785
1a
ENSE00001903805
chr1:
114414381-114414159
223
PTN22_HUMAN
1-29
29
2
A:7-29
B:7-29
23
23
1.3
ENST00000359785
3
ENSE00002095549
chr1:
114402082-114401974
109
PTN22_HUMAN
30-66
37
2
A:30-66
B:30-66
37
37
1.4b
ENST00000359785
4b
ENSE00002138335
chr1:
114401700-114401624
77
PTN22_HUMAN
66-91
26
2
A:66-91
B:66-91
26
26
1.5
ENST00000359785
5
ENSE00002111906
chr1:
114401195-114401100
96
PTN22_HUMAN
92-123
32
2
A:92-123
B:92-123
32
32
1.6
ENST00000359785
6
ENSE00002119544
chr1:
114400398-114400360
39
PTN22_HUMAN
124-136
13
2
A:124-136
B:124-136
13
13
1.8
ENST00000359785
8
ENSE00002111803
chr1:
114399241-114399170
72
PTN22_HUMAN
137-160
24
2
A:137-160
B:137-160
24
24
1.9
ENST00000359785
9
ENSE00002112169
chr1:
114399063-114399004
60
PTN22_HUMAN
161-180
20
2
A:161-180
B:161-180
20
20
1.10
ENST00000359785
10
ENSE00002094492
chr1:
114397671-114397529
143
PTN22_HUMAN
181-228
48
2
A:181-228 (gaps)
B:181-228 (gaps)
48
48
1.11
ENST00000359785
11
ENSE00002090732
chr1:
114397159-114397093
67
PTN22_HUMAN
228-250
23
2
A:228-250
B:228-250
23
23
1.12
ENST00000359785
12
ENSE00002116075
chr1:
114394726-114394649
78
PTN22_HUMAN
251-276
26
2
A:251-276
B:251-276
26
26
1.13
ENST00000359785
13
ENSE00002137845
chr1:
114391248-114391162
87
PTN22_HUMAN
277-305
29
2
A:277-290
B:277-290
14
14
1.14
ENST00000359785
14
ENSE00002130300
chr1:
114381242-114381166
77
PTN22_HUMAN
306-331
26
0
-
-
1.15
ENST00000359785
15
ENSE00002120084
chr1:
114381029-114380212
818
PTN22_HUMAN
331-604
274
0
-
-
1.16
ENST00000359785
16
ENSE00002111199
chr1:
114377615-114377532
84
PTN22_HUMAN
604-632
29
0
-
-
1.17
ENST00000359785
17
ENSE00002137375
chr1:
114377061-114376931
131
PTN22_HUMAN
632-675
44
0
-
-
1.18a
ENST00000359785
18a
ENSE00000913528
chr1:
114375760-114375733
28
PTN22_HUMAN
676-685
10
0
-
-
1.19
ENST00000359785
19
ENSE00000913529
chr1:
114372651-114372571
81
PTN22_HUMAN
685-712
28
0
-
-
1.20
ENST00000359785
20
ENSE00000913530
chr1:
114372329-114372214
116
PTN22_HUMAN
712-750
39
0
-
-
1.21
ENST00000359785
21
ENSE00001020762
chr1:
114367794-114367764
31
PTN22_HUMAN
751-761
11
0
-
-
1.22b
ENST00000359785
22b
ENSE00001771523
chr1:
114362276-114362199
78
PTN22_HUMAN
761-787
27
0
-
-
1.23d
ENST00000359785
23d
ENSE00001950193
chr1:
114357591-114356433
1159
PTN22_HUMAN
787-807
21
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qcja_ (A:)
1b: SCOP_d2qcjb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2qcja_
A:
1b
d2qcjb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asym.Unit (94 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
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