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2QCF
Asym. Unit
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Asym.Unit (111 KB)
Biol.Unit 1 (210 KB)
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Title
:
CRYSTAL STRUCTURE OF THE OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE DOMAIN (ASP312ASN MUTANT) OF HUMAN UMP SYNTHASE BOUND TO 5-FLUORO-UMP
Authors
:
J. Wittmann, M. Rudolph
Date
:
19 Jun 07 (Deposition) - 06 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.22
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ump Synthase, Decarboxylase, Catalytic Proficiency, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. G. Wittmann, D. Heinrich, K. Gasow, A. Frey, U. Diederichsen, M. G. Rudolph
Structures Of The Human Orotidine-5'-Monophosphate Decarboxylase Support A Covalent Mechanism And Provide A Framework For Drug Design.
Structure V. 16 82 2008
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 5-FLUORO-URIDINE-5'-MONOPHOSPHATE (5FUa)
2a: S-MERCAPTOCYSTEINE (CSSa)
3a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5FU
1
Ligand/Ion
5-FLUORO-URIDINE-5'-MONOPHOSPHATE
2
CSS
1
Mod. Amino Acid
S-MERCAPTOCYSTEINE
3
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:257 , ASP A:259 , LYS A:281 , HIS A:283 , ASN A:312 , LYS A:314 , ASP A:317 , ILE A:318 , THR A:321 , MET A:371 , SER A:372 , ILE A:401 , PRO A:417 , GLN A:430 , TYR A:432 , GLY A:450 , ARG A:451 , HOH A:503 , HOH A:505 , HOH A:513
BINDING SITE FOR RESIDUE 5FU A 501
2
AC2
SOFTWARE
GLY A:228 , ALA A:229 , GLN A:248 , LEU A:421 , ALA A:423 , HOH A:555 , HOH A:601
BINDING SITE FOR RESIDUE GOL A 502
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006810 (G429R, chain A, )
2: VAR_020615 (I446V, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006810
G
429
R
UMPS_HUMAN
Disease (ORAC1)
---
A
G
429
R
2
UniProt
VAR_020615
I
446
V
UMPS_HUMAN
Polymorphism
3772809
A
I
446
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: OMPDECASE (A:309-322)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OMPDECASE
PS00156
Orotidine 5'-phosphate decarboxylase active site.
UMPS_HUMAN
309-322
1
A:309-322
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Exons
(4, 4)
Info
All Exons
Exon 1.5a (A:223-328)
Exon 1.7 (A:328-386)
Exon 1.8a (A:387-425)
Exon 1.9d (A:425-479)
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All Exon Boundaries
1: Boundary 1.3/1.5a
2: Boundary 1.5a/1.7
3: Boundary 1.7/1.8a
4: Boundary 1.8a/1.9d
5: Boundary 1.9d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000232607
1a
ENSE00000823837
chr3:
124449213-124449474
262
UMPS_HUMAN
1-52
52
0
-
-
1.3
ENST00000232607
3
ENSE00000776933
chr3:
124453940-124454093
154
UMPS_HUMAN
53-104
52
0
-
-
1.5a
ENST00000232607
5a
ENSE00000776934
chr3:
124456415-124457086
672
UMPS_HUMAN
104-328
225
1
A:223-328
106
1.7
ENST00000232607
7
ENSE00000823838
chr3:
124458871-124459046
176
UMPS_HUMAN
328-386
59
1
A:328-386
59
1.8a
ENST00000232607
8a
ENSE00000823839
chr3:
124460999-124461113
115
UMPS_HUMAN
387-425
39
1
A:387-425
39
1.9d
ENST00000232607
9d
ENSE00001382696
chr3:
124462762-124464040
1279
UMPS_HUMAN
425-480
56
1
A:425-479
55
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2qcfA00 (A:223-479)
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
2qcfA00
A:223-479
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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