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2QBX
Biol. Unit 3
Info
Asym.Unit (73 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
EPHB2/SNEW ANTAGONISTIC PEPTIDE COMPLEX
Authors
:
J. E. Chrencik, A. Brooun, M. I. Recht, G. Nicola, E. B. Pasquale, P. Kuhn, Accelerated Technologies Center For Gene To 3D Structure (Atcg3D)
Date
:
18 Jun 07 (Deposition) - 06 Nov 07 (Release) - 08 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,D,P
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,D,P (1x)
Keywords
:
Receptor Tyrosine Kinase, Bi-Directional Signaling, Tumorigenesis, Angiogenesis, Signaling Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Chrencik, A. Brooun, M. I. Recht, G. Nicola, L. K. Davis, R. Abagyan, H. Widmer, E. B. Pasquale, P. Kuhn
Three-Dimensional Structure Of The Ephb2 Receptor In Complex With An Antagonistic Peptide Reveals A Novel Mode Of Inhibition.
J. Biol. Chem. V. 282 36505 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS B:95 , ARG B:203
BINDING SITE FOR RESIDUE SO4 B 401
02
AC2
SOFTWARE
ARG B:88 , GLY B:90 , HIS B:92
BINDING SITE FOR RESIDUE SO4 B 402
03
AC3
SOFTWARE
MET B:32 , ASP B:33 , LEU B:41 , HOH B:470
BINDING SITE FOR RESIDUE SO4 B 403
04
AC4
SOFTWARE
PHE A:135 , PRO A:136 , ASN A:137 , PRO A:142 , HOH A:481
BINDING SITE FOR RESIDUE SO4 A 404
05
AC5
SOFTWARE
ARG A:179 , HOH A:480 , ARG B:179
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
SER A:55 , ARG A:65
BINDING SITE FOR RESIDUE SO4 A 406
07
AC7
SOFTWARE
PRO A:109 , SER A:110 , HOH B:441 , GLN D:6 , HOH D:285
BINDING SITE FOR RESIDUE SO4 D 407
08
AC8
SOFTWARE
ARG A:88 , GLY A:90 , HIS A:92
BINDING SITE FOR RESIDUE SO4 A 408
09
AC9
SOFTWARE
THR B:36 , SER B:75 , SER B:76 , SER B:114
BINDING SITE FOR RESIDUE SO4 B 409
10
BC1
SOFTWARE
PRO B:109 , SER B:110 , GLN P:6 , HOH P:14
BINDING SITE FOR RESIDUE SO4 B 410
11
BC2
SOFTWARE
TRP B:80 , TYR B:122 , MET B:139 , GLU B:140 , GLN B:187 , HOH B:453 , HOH B:491
BINDING SITE FOR RESIDUE SO4 B 411
12
BC3
SOFTWARE
SER B:55 , ARG B:65
BINDING SITE FOR RESIDUE SO4 B 412
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EPH_LBD (A:28-203,B:28-203)
2: RECEPTOR_TYR_KIN_V_1 (A:186-203,B:186-203)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHB2_HUMAN
20-202
2
A:28-203
B:28-203
2
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHB2_HUMAN
178-198
2
A:186-203
B:186-203
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qbxA00 (A:28-203)
1b: CATH_2qbxB00 (B:28-203)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
2qbxA00
A:28-203
1b
2qbxB00
B:28-203
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ephrin_lbd_2qbxB01 (B:28-203)
1b: PFAM_Ephrin_lbd_2qbxB02 (B:28-203)
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)
Clan
:
GBD
(153)
Family
:
Ephrin_lbd
(12)
Homo sapiens (Human)
(9)
1a
Ephrin_lbd-2qbxB01
B:28-203
1b
Ephrin_lbd-2qbxB02
B:28-203
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Asymmetric Unit 1
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Asym.Unit (73 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (66 KB)
Header - Biol.Unit 3
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