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Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF PDZ-FIBRONECTIN FUSION PROTEIN
Authors
:
J. Huang, K. Makabe, A. Koide, S. Koide
Date
:
18 Jun 07 (Deposition) - 22 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fibronectin Pdz, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Huang, A. Koide, K. Makabe, S. Koide
Design Of Protein Function Leaps By Directed Domain Interface Evolution.
Proc. Natl. Acad. Sci. Usa V. 105 6578 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_046673 (S105R, chain A, )
2: VAR_046674 (G139V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_046673
K
914
R
LAP2_HUMAN
Polymorphism
34521887
A
S
105
R
2
UniProt
VAR_046674
G
1089
V
LAP2_HUMAN
Polymorphism
35601230
A
G
139
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:190-194)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
ERBIN_HUMAN
1321-1410
1
A:190-194
[
close PROSITE info
]
Exons
(6, 6)
Info
All Exons
Exon 1.20 (A:1-5)
Exon 1.21 (A:6-33 (gaps))
Exon 1.22a (A:34-153 (gaps))
Exon 1.25a (A:154-160)
Exon 1.26b (A:161-188 (gaps))
Exon 1.27b (A:189-195 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.19/1.20
2: Boundary 1.20/1.21
3: Boundary 1.21/1.22a
4: Boundary 1.22a/1.25a
5: Boundary 1.25a/1.26b
6: Boundary 1.26b/1.27b
7: Boundary 1.27b/1.27e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284037
1a
ENSE00001850711
chr5:
65222303-65222634
332
ERBIN_HUMAN
-
0
0
-
-
1.3b
ENST00000284037
3b
ENSE00001147720
chr5:
65284463-65284510
48
ERBIN_HUMAN
-
0
0
-
-
1.4
ENST00000284037
4
ENSE00000912221
chr5:
65288538-65288735
198
ERBIN_HUMAN
1-63
63
0
-
-
1.5
ENST00000284037
5
ENSE00000912222
chr5:
65290575-65290692
118
ERBIN_HUMAN
64-103
40
0
-
-
1.6
ENST00000284037
6
ENSE00000912223
chr5:
65307877-65307955
79
ERBIN_HUMAN
103-129
27
0
-
-
1.7
ENST00000284037
7
ENSE00000837126
chr5:
65309377-65309466
90
ERBIN_HUMAN
129-159
31
0
-
-
1.8
ENST00000284037
8
ENSE00000837127
chr5:
65310497-65310553
57
ERBIN_HUMAN
159-178
20
0
-
-
1.9
ENST00000284037
9
ENSE00000912224
chr5:
65317150-65317213
64
ERBIN_HUMAN
178-199
22
0
-
-
1.10b
ENST00000284037
10b
ENSE00000912225
chr5:
65319118-65319192
75
ERBIN_HUMAN
200-224
25
0
-
-
1.11b
ENST00000284037
11b
ENSE00000912226
chr5:
65320134-65320278
145
ERBIN_HUMAN
225-273
49
0
-
-
1.12b
ENST00000284037
12b
ENSE00000912227
chr5:
65321308-65321380
73
ERBIN_HUMAN
273-297
25
0
-
-
1.13
ENST00000284037
13
ENSE00000912228
chr5:
65321676-65321805
130
ERBIN_HUMAN
297-340
44
0
-
-
1.14
ENST00000284037
14
ENSE00000912229
chr5:
65322130-65322245
116
ERBIN_HUMAN
341-379
39
0
-
-
1.15
ENST00000284037
15
ENSE00000912230
chr5:
65324102-65324171
70
ERBIN_HUMAN
379-402
24
0
-
-
1.16
ENST00000284037
16
ENSE00000912231
chr5:
65334211-65334310
100
ERBIN_HUMAN
403-436
34
0
-
-
1.17
ENST00000284037
17
ENSE00000912232
chr5:
65338905-65339026
122
ERBIN_HUMAN
436-476
41
0
-
-
1.18b
ENST00000284037
18b
ENSE00000912233
chr5:
65339965-65340138
174
ERBIN_HUMAN
477-534
58
0
-
-
1.19
ENST00000284037
19
ENSE00000912234
chr5:
65342181-65342366
186
ERBIN_HUMAN
535-596
62
0
-
-
1.20
ENST00000284037
20
ENSE00000749858
chr5:
65344495-65344609
115
ERBIN_HUMAN
597-635
39
1
A:1-5
5
1.21
ENST00000284037
21
ENSE00000912235
chr5:
65346611-65346794
184
ERBIN_HUMAN
635-696
62
1
A:6-33 (gaps)
46
1.22a
ENST00000284037
22a
ENSE00000837128
chr5:
65349234-65350779
1546
ERBIN_HUMAN
696-1211
516
1
A:34-153 (gaps)
495
1.25a
ENST00000284037
25a
ENSE00001082465
chr5:
65367997-65368119
123
ERBIN_HUMAN
1212-1252
41
1
A:154-160
7
1.26b
ENST00000284037
26b
ENSE00002155220
chr5:
65370852-65371058
207
ERBIN_HUMAN
1253-1321
69
1
A:161-188 (gaps)
57
1.27b
ENST00000284037
27b
ENSE00000837130
chr5:
65372144-65372236
93
ERBIN_HUMAN
1322-1352
31
1
A:189-195 (gaps)
16
1.27e
ENST00000284037
27e
ENSE00000837131
chr5:
65372703-65372777
75
ERBIN_HUMAN
1353-1377
25
0
-
-
1.28j
ENST00000284037
28j
ENSE00001896859
chr5:
65374251-65378377
4127
ERBIN_HUMAN
1378-1412
35
0
-
-
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Pfam Domains
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Sorry, no Info available
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