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2QB7
Asym. Unit
Info
Asym.Unit (151 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (73 KB)
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(1)
Title
:
SACCHAROMYCES CEREVISIAE CYTOSOLIC EXOPOLYPHOSPHATASE, PHOSPHATE COMPLEX
Authors
:
S. A. White, E. Ugochukwu
Date
:
16 Jun 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
A/B/A Structure, Dhh Family Phosphatase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ugochukwu, A. L. Lovering, O. C. Mather, T. W. Young, S. A. White
The Crystal Structure Of The Cytosolic Exopolyphosphatase From Saccharomyces Cerevisiae Reveals The Basis For Substrate Specificity.
J. Mol. Biol. V. 371 1007 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
2d: COBALT (II) ION (COd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CO
4
Ligand/Ion
COBALT (II) ION
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
PO4
6
Ligand/Ion
PHOSPHATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:41 , ASP A:127 , HIS A:148 , PO4 A:501 , HOH A:1354
BINDING SITE FOR RESIDUE CO A 401
02
AC2
SOFTWARE
PO4 A:501 , PO4 A:503 , HOH A:979 , HOH A:1010 , HOH A:1309 , HOH A:1355
BINDING SITE FOR RESIDUE CO A 402
03
AC3
SOFTWARE
ASN A:35 , SER A:37 , ASP A:39 , ASP A:127 , HIS A:148 , HIS A:149 , LYS A:268 , CO A:401 , CO A:402 , PO4 A:503 , HOH A:979 , HOH A:1292 , HOH A:1293 , HOH A:1354 , HOH A:1355
BINDING SITE FOR RESIDUE PO4 A 501
04
AC4
SOFTWARE
SER A:286 , ARG A:334 , THR A:380 , ARG A:381 , PO4 A:503 , HOH A:921 , HOH A:1062 , HOH A:1309 , HOH A:1355
BINDING SITE FOR RESIDUE PO4 A 502
05
AC5
SOFTWARE
LYS A:268 , ARG A:381 , LYS A:382 , CO A:402 , PO4 A:501 , PO4 A:502 , ACT A:902 , HOH A:1010 , HOH A:1140 , HOH A:1309 , HOH A:1355
BINDING SITE FOR RESIDUE PO4 A 503
06
AC6
SOFTWARE
ASP B:41 , ASP B:127 , HIS B:148 , PO4 B:501 , HOH B:1219
BINDING SITE FOR RESIDUE CO B 401
07
AC7
SOFTWARE
PO4 B:501 , PO4 B:502 , HOH B:953 , HOH B:973 , HOH B:1183 , HOH B:1220
BINDING SITE FOR RESIDUE CO B 402
08
AC8
SOFTWARE
ASN B:35 , SER B:37 , ASP B:39 , ASP B:127 , HIS B:148 , HIS B:149 , LYS B:268 , CO B:401 , CO B:402 , PO4 B:502 , HOH B:953 , HOH B:1161 , HOH B:1163 , HOH B:1219 , HOH B:1220
BINDING SITE FOR RESIDUE PO4 B 501
09
AC9
SOFTWARE
LYS B:268 , ARG B:381 , LYS B:382 , CO B:402 , PO4 B:501 , PO4 B:503 , HOH B:1162 , HOH B:1183 , HOH B:1188 , HOH B:1220
BINDING SITE FOR RESIDUE PO4 B 502
10
BC1
SOFTWARE
SER B:286 , ARG B:334 , THR B:380 , ARG B:381 , PO4 B:502 , HOH B:1154 , HOH B:1183 , HOH B:1220
BINDING SITE FOR RESIDUE PO4 B 503
11
BC2
SOFTWARE
SER A:258 , HOH A:951 , SER B:62 , GLU B:63 , GLU B:64 , HOH B:1077
BINDING SITE FOR RESIDUE ACT B 901
12
BC3
SOFTWARE
LYS A:268 , ARG A:381 , LYS A:382 , PO4 A:503
BINDING SITE FOR RESIDUE ACT A 902
13
BC4
SOFTWARE
ARG A:208 , TYR A:244 , ARG A:327 , HOH A:1210
BINDING SITE FOR RESIDUE ACT A 903
14
BC5
SOFTWARE
HOH A:920 , HOH A:956 , HOH A:961 , HOH A:1044
BINDING SITE FOR RESIDUE EDO A 904
15
BC6
SOFTWARE
HIS B:148 , HIS B:149 , VAL B:163 , LYS B:164 , HOH B:992 , HOH B:1087
BINDING SITE FOR RESIDUE EDO B 905
16
BC7
SOFTWARE
LYS B:289 , ARG B:290 , TRP B:326 , HOH B:1190
BINDING SITE FOR RESIDUE EDO B 906
17
BC8
SOFTWARE
HIS B:148 , SER B:166 , GLY B:167 , LYS B:209 , HOH B:911 , HOH B:932 , HOH B:1110
BINDING SITE FOR RESIDUE EDO B 907
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:5-397 | B:4-397 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YHR201C
1
YHR201C.1
VIII:501143-499950
1194
PPX1_YEAST
1-397
397
2
A:5-397
B:4-397 (gaps)
393
394
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_DHHA2_2qb7B01 (B:244-392)
1b: PFAM_DHHA2_2qb7B02 (B:244-392)
2a: PFAM_DHH_2qb7B03 (B:24-200)
2b: PFAM_DHH_2qb7B04 (B:24-200)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: DHHA2]
(7)
Family
:
DHHA2
(7)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
1a
DHHA2-2qb7B01
B:244-392
1b
DHHA2-2qb7B02
B:244-392
Clan
:
no clan defined [family: DHH]
(7)
Family
:
DHH
(7)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
2a
DHH-2qb7B03
B:24-200
2b
DHH-2qb7B04
B:24-200
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
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