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2QAR
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
STRUCTURE OF THE 2TEL CRYSTALLIZATION MODULE FUSED TO T4 LYSOZYME WITH A HELICAL LINKER.
Authors
:
S. Nauli, J. U. Bowie
Date
:
15 Jun 07 (Deposition) - 15 Jan 08 (Release) - 26 Aug 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Polymer, Crystallization Modules, Sterile Alpha Motif, Hydrolase Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Nauli, S. Farr, Y. J. Lee, H. Y. Kim, S. Faham, J. U. Bowie
Polymer-Driven Crystallization.
Protein Sci. V. 16 2542 2007
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: AMMONIUM ION (NH4a)
1b: AMMONIUM ION (NH4b)
2a: NITRATE ION (NO3a)
2b: NITRATE ION (NO3b)
2c: NITRATE ION (NO3c)
2d: NITRATE ION (NO3d)
2e: NITRATE ION (NO3e)
2f: NITRATE ION (NO3f)
2g: NITRATE ION (NO3g)
2h: NITRATE ION (NO3h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NH4
2
Ligand/Ion
AMMONIUM ION
2
NO3
8
Ligand/Ion
NITRATE ION
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:25 , PRO A:26 , ILE A:27 , LEU A:63 , LEU A:89 , GLY A:95 , GLY A:96
BINDING SITE FOR RESIDUE NO3 A 102
02
AC2
SOFTWARE
LEU A:62 , LEU A:63 , LEU A:65 , PHE A:70 , LEU A:85
BINDING SITE FOR RESIDUE NH4 A 201
03
AC3
SOFTWARE
ARG B:23 , LEU E:24 , HOH E:116 , HOH E:127
BINDING SITE FOR RESIDUE NO3 B 109
04
AC4
SOFTWARE
GLN D:25 , PRO D:26 , ILE D:27 , LEU D:89 , GLY D:95 , GLY D:96
BINDING SITE FOR RESIDUE NO3 D 101
05
AC5
SOFTWARE
ASP C:62 , LYS C:66 , ARG D:23 , TYR D:28
BINDING SITE FOR RESIDUE NO3 D 104
06
AC6
SOFTWARE
PRO D:19 , ALA D:20 , HIS D:21 , LEU D:22 , TRP D:40
BINDING SITE FOR RESIDUE NO3 D 106
07
AC7
SOFTWARE
GLU D:68 , LYS E:67
BINDING SITE FOR RESIDUE NO3 D 108
08
AC8
SOFTWARE
LEU D:62 , LEU D:63 , LEU D:65 , PHE D:70 , LEU D:85 , HOH D:210
BINDING SITE FOR RESIDUE NH4 D 202
09
AC9
SOFTWARE
GLN E:25 , PRO E:26 , ILE E:27 , LEU E:89
BINDING SITE FOR RESIDUE NO3 E 108
10
BC1
SOFTWARE
ALA D:14 , HIS D:87 , HOH D:214 , LYS E:60 , LEU E:64
BINDING SITE FOR RESIDUE NO3 E 109
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(1, 4)
Info
All Exons
Exon 1.5 (A:14-20 | B:15-20 | D:14-20 | E:15...)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000396373
2
ENSE00001696637
chr12:
11903767-11903782
16
ETV6_HUMAN
1-6
6
0
-
-
1.3
ENST00000396373
3
ENSE00001770390
chr12:
11904330-11904335
6
ETV6_HUMAN
6-8
3
0
-
-
1.4
ENST00000396373
4
ENSE00001639290
chr12:
11904772-11904779
8
ETV6_HUMAN
8-10
3
0
-
-
1.5
ENST00000396373
5
ENSE00002180215
chr12:
11905384-11905513
130
ETV6_HUMAN
11-52
42
4
A:14-20
B:15-20
D:14-20
E:15-20
7
6
7
6
1.6
ENST00000396373
6
ENSE00001803058
chr12:
11992074-11992238
165
ETV6_HUMAN
-
0
0
-
-
1.7
ENST00000396373
7
ENSE00001688954
chr12:
12006361-12006495
135
ETV6_HUMAN
-
0
0
-
-
1.8
ENST00000396373
8
ENSE00001700080
chr12:
12022358-12022903
546
ETV6_HUMAN
-
0
0
-
-
1.9
ENST00000396373
9
ENSE00001691733
chr12:
12037379-12037521
143
ETV6_HUMAN
-
0
0
-
-
1.10
ENST00000396373
10
ENSE00001595848
chr12:
12038860-12038960
101
ETV6_HUMAN
-
0
0
-
-
1.11a
ENST00000396373
11a
ENSE00001746849
chr12:
12043875-12044063
189
ETV6_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2qara_ (A:)
1b: SCOP_d2qarb_ (B:)
1c: SCOP_d2qard_ (D:)
1d: SCOP_d2qare_ (E:)
2a: SCOP_d2qarc_ (C:)
2b: SCOP_d2qarf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
SAM/Pointed domain
(61)
Family
:
Pointed domain
(12)
Protein domain
:
Etv6 transcription factor pointed domain (Tel SAM)
(5)
Escherichia coli [TaxId: 562]
(3)
1a
d2qara_
A:
1b
d2qarb_
B:
1c
d2qard_
D:
1d
d2qare_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
Phage lysozyme
(550)
Protein domain
:
Phage T4 lysozyme
(546)
Bacteriophage T4 [TaxId: 10665]
(546)
2a
d2qarc_
C:
2b
d2qarf_
F:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2qarD00 (D:14-97)
1b: CATH_2qarA00 (A:14-99)
2a: CATH_2qarC00 (C:1-163)
2b: CATH_2qarF00 (F:1-163)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
Transcription Factor, Ets-1
(30)
Escherichia coli. Organism_taxid: 562.
(1)
1a
2qarD00
D:14-97
1b
2qarA00
A:14-99
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.40, no name defined]
(526)
Escherichia coli. Organism_taxid: 562.
(1)
2a
2qarC00
C:1-163
2b
2qarF00
F:1-163
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (122 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
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