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2Q9T
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (144 KB)
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(1)
Title
:
HIGH-RESOLUTION STRUCTURE OF THE DING PROTEIN FROM PSEUDOMONAS FLUORESCENS
Authors
:
S. Moniot, S. Ahn, M. Elias, D. Kim, K. Scott, E. Chabriere
Date
:
14 Jun 07 (Deposition) - 17 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.43
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ding Protein, Phosphate-Binding, Venus Flytrap Fold, Psts Protein, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Ahn, S. Moniot, M. Elias, E. Chabriere, D. Kim, K. Scott
Structure-Function Relationships In A Bacterial Ding Protein.
Febs Lett. V. 581 3455 2007
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: GLYCEROL (GOLa)
4a: PHOSPHATE ION (PO4a)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
PO4
1
Ligand/Ion
PHOSPHATE ION
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:7 , THR A:8 , LEU A:9 , GLY A:31 , SER A:32 , ASP A:62 , ARG A:141 , SER A:145 , GLY A:146 , THR A:147
BINDING SITE FOR RESIDUE PO4 A 901
02
AC2
SOFTWARE
LYS A:158 , HOH A:1146 , HOH A:1448 , HOH A:1451
BINDING SITE FOR RESIDUE ACT A 902
03
AC3
SOFTWARE
THR A:169 , THR A:170 , HOH A:964 , HOH A:1188 , HOH A:1218 , HOH A:1395 , HOH A:1646
BINDING SITE FOR RESIDUE ACT A 904
04
AC4
SOFTWARE
THR A:169 , THR A:174 , THR A:338 , HOH A:1188 , HOH A:1218 , HOH A:1587 , HOH A:1601
BINDING SITE FOR RESIDUE SO4 A 908
05
AC5
SOFTWARE
MET A:0 , ASP A:1 , LYS A:54 , HOH A:963 , HOH A:1457 , HOH A:1492
BINDING SITE FOR RESIDUE SO4 A 911
06
AC6
SOFTWARE
ALA A:302 , PRO A:369 , LEU A:370 , HOH A:1093 , HOH A:1121 , HOH A:1144 , HOH A:1160 , HOH A:1178
BINDING SITE FOR RESIDUE EDO A 903
07
AC7
SOFTWARE
ALA A:186 , HOH A:1228
BINDING SITE FOR RESIDUE EDO A 906
08
AC8
SOFTWARE
LEU A:180 , ALA A:182 , ALA A:244 , HOH A:1578 , HOH A:1670
BINDING SITE FOR RESIDUE EDO A 907
09
AC9
SOFTWARE
ARG A:345 , HOH A:968 , HOH A:1008 , HOH A:1075 , HOH A:1572 , HOH A:1588
BINDING SITE FOR RESIDUE EDO A 909
10
BC1
SOFTWARE
ASP A:107 , ARG A:227 , GLN A:237 , HOH A:1440
BINDING SITE FOR RESIDUE EDO A 910
11
BC2
SOFTWARE
PHE A:98 , ASN A:99 , LYS A:224 , HOH A:995 , HOH A:1064 , HOH A:1265 , HOH A:1545
BINDING SITE FOR RESIDUE GOL A 905
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2q9ta_ (A:)
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Classes
(
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Phosphate-binding protein
(19)
Pseudomonas fluorescens [TaxId: 294]
(4)
1a
d2q9ta_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PBP_like_2_2q9tA01 (A:1-320)
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Clans
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
PBP
(391)
Family
:
PBP_like_2
(13)
Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
(1)
1a
PBP_like_2-2q9tA01
A:1-320
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Chain A
Asymmetric Unit 1
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Asym.Unit (148 KB)
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