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2Q9M
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
4-SUBSTITUTED TRINEMS AS BROAD SPECTRUM-LACTAMASE INHIBITORS: STRUCTURE-BASED DESIGN, SYNTHESIS AND BIOLOGICAL ACTIVITY
Authors
:
I. Plantan, L. Selic, T. Mesar, P. Stefanic Anderluh, M. Oblak, A. Prezelj, L. Hesse, M. Andrejasic, M. Vilar, D. Turk, A. Kocijan, T. Prevec, G. Vilfan, D. Kocjan, A. Copar, U. Urleb, T. Solmajer
Date
:
13 Jun 07 (Deposition) - 21 Aug 07 (Release) - 31 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Lactamase Inhibitor, Tricyclic Carbapenem, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Plantan, L. Selic, T. Mesar, P. S. Anderluh, M. Oblak, A. Prezelj, L. Hesse, M. Andrejasic, M. Vilar, D. Turk, A. Kocijan, T. Prevec, G. Vilfan, D. Kocjan, A. Copar, U. Urleb, T. Solmajer
4-Substituted Trinems As Broad Spectrum Beta-Lactamase Inhibitors: Structure-Based Design, Synthesis, And Biological Activity
J. Med. Chem. V. 50 4113 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (1R,4S,7AS)-1-(1-FORMYLPROP-1-EN-1... (LK7a)
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Label:
No.
Name
Count
Type
Full Name
1
LK7
1
Ligand/Ion
(1R,4S,7AS)-1-(1-FORMYLPROP-1-EN-1-YL)-4-METHOXY-2,4,5,6,7,7A-HEXAHYDRO-1H-ISOINDOLE-3-CARBOXYLIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:64 , TYR A:150 , ASN A:152 , SER A:289 , LEU A:293 , GLY A:317 , SER A:318 , HOH A:548 , HOH A:706 , HOH A:714
BINDING SITE FOR RESIDUE LK7 A 0
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_AMPC_ENTCL_004 (I16V, chain A, )
2: VAR_AMPC_ENTCL_005 (P38S, chain A, )
3: VAR_AMPC_ENTCL_006 (A88P, chain A, )
4: VAR_AMPC_ENTCL_007 (L132V, chain A, )
5: VAR_AMPC_ENTCL_008 (N242K, chain A, )
6: VAR_AMPC_ENTCL_009 (A299V, chain A, )
7: VAR_AMPC_ENTCL_010 (T342K, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_AMPC_ENTCL_004
*
I
36
V
AMPC_ENTCL
---
---
A
I
16
V
2
UniProt
VAR_AMPC_ENTCL_005
*
P
58
S
AMPC_ENTCL
---
---
A
P
38
S
3
UniProt
VAR_AMPC_ENTCL_006
*
A
108
P
AMPC_ENTCL
---
---
A
A
88
P
4
UniProt
VAR_AMPC_ENTCL_007
*
L
152
V
AMPC_ENTCL
---
---
A
L
132
V
5
UniProt
VAR_AMPC_ENTCL_008
*
N
262
K
AMPC_ENTCL
---
---
A
N
242
K
6
UniProt
VAR_AMPC_ENTCL_009
*
A
319
V
AMPC_ENTCL
---
---
A
A
299
V
7
UniProt
VAR_AMPC_ENTCL_010
*
T
362
K
AMPC_ENTCL
---
---
A
T
342
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_C (A:60-67)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_C
PS00336
Beta-lactamase class-C active site.
AMPC_ENTCL
80-87
1
A:60-67
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2q9ma_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
automated matches
(81)
Enterobacter cloacae [TaxId: 550]
(3)
1a
d2q9ma_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2q9mA00 (A:2-360)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Enterobacter cloacae. Organism_taxid: 550. Strain: 908r
(1)
1a
2q9mA00
A:2-360
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Beta_lactamase_2q9mA01 (A:12-360)
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(
)
Clan
:
Beta-lactamase
(210)
Family
:
Beta-lactamase
(79)
Enterobacter cloacae
(8)
1a
Beta-lactamase-2q9mA01
A:12-360
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Asymmetric Unit 1
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