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2Q7Z
Asym. Unit
Info
Asym.Unit (213 KB)
Biol.Unit 1 (45 KB)
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Models
(5 )
Title
:
SOLUTION STRUCTURE OF THE 30 SCR DOMAINS OF HUMAN COMPLEMENT RECEPTOR 1
Authors
:
P. B. Furtado, C. Y. Huang, D. Ihyembe, R. A. Hammond, H. C. Marsh, S. J. Perkins
Date
:
08 Jun 07 (Deposition) - 16 Oct 07 (Release) - 07 Apr 10 (Revision)
Method
:
SOLUTION SCATTERING
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (5 x)
Biol. Unit 1: A (1x)
Keywords
:
Complement, Scr Domain, Blood Group Antigen, Complement Pathway, Glycoprotein, Immune Response, Innate Immunity, Membrane, Polymorphism, Pyrrolidone Carboxylic Acid, Receptor, Sushi, Transmembrane, Immune System
(Keyword Search:
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Reference
:
P. B. Furtado, C. Y. Huang, D. Ihyembe, R. A. Hammond, H. C. Marsh, S. J. Perkins
The Partly Folded Back Solution Structure Arrangement Of The 30 Scr Domains In Human Complement Receptor Type 1 (Cr1) Permits Access To Its C3B And C4B Ligands
J. Mol. Biol. V. 375 102 2008
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_013819 (H1167R, chain A, )
02: VAR_013820 (T1367I, chain A, )
03: VAR_020263 (T1367M, chain A, )
04: VAR_055685 (N1499S, chain A, )
05: VAR_013821 (K1549E, chain A, )
06: VAR_013822 (R1560G, chain A, )
07: VAR_013823 (S1569T, chain A, )
08: VAR_013824 (I1574V, chain A, )
09: VAR_013825 (P1786R, chain A, )
10: VAR_013826 (H1809D, chain A, )
11: VAR_055686 (A1928A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_013819
H
1208
R
CR1_HUMAN
Polymorphism
2274567
A
H
1167
R
02
UniProt
VAR_013820
T
1408
I
CR1_HUMAN
Polymorphism
---
A
T
1367
I
03
UniProt
VAR_020263
T
1408
M
CR1_HUMAN
Polymorphism
3737002
A
T
1367
M
04
UniProt
VAR_055685
N
1540
S
CR1_HUMAN
Polymorphism
17259045
A
N
1499
S
05
UniProt
VAR_013821
K
1590
E
CR1_HUMAN
Polymorphism
17047660
A
K
1549
E
06
UniProt
VAR_013822
R
1601
G
CR1_HUMAN
Polymorphism
17047661
A
R
1560
G
07
UniProt
VAR_013823
S
1610
T
CR1_HUMAN
Polymorphism
4844609
A
S
1569
T
08
UniProt
VAR_013824
I
1615
V
CR1_HUMAN
Polymorphism
6691117
A
I
1574
V
09
UniProt
VAR_013825
P
1827
R
CR1_HUMAN
Polymorphism
3811381
A
P
1786
R
10
UniProt
VAR_013826
H
1850
D
CR1_HUMAN
Polymorphism
---
A
H
1809
D
11
UniProt
VAR_055686
T
1969
A
CR1_HUMAN
Polymorphism
2296160
A
A
1928
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 29)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|A:61-122|A:123-193|A:254-314|A:1...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CR1_HUMAN
41-101
102-163
164-234
295-355
236-293
356-418
419-489
491-551
552-613
614-684
745-805
686-743
806-868
869-939
941-1001
1002-1063
1064-1134
1195-1255
1136-1193
1256-1318
1319-1389
1394-1454
1455-1516
1517-1587
1648-1708
1589-1646
1709-1771
1772-1842
1846-1906
1907-1967
29
-
A:61-122
A:123-193
A:254-314
A:195-252
A:315-377
A:378-448
A:450-510
A:511-572
A:573-643
A:704-764
A:645-702
A:765-827
A:828-898
A:900-960
A:961-1022
A:1023-1093
A:1154-1214
A:1095-1152
A:1215-1277
A:1278-1348
A:1353-1413
A:1414-1475
A:1476-1546
A:1607-1667
A:1548-1605
A:1668-1730
A:1731-1801
A:1805-1865
A:1866-1926
[
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Exons
(35, 35)
Info
All Exons
Exon 1.2 (A:1-60)
Exon 1.3a (A:60-93)
Exon 1.4 (A:93-122)
Exon 1.5 (A:122-255)
Exon 1.6 (A:255-314)
Exon 1.7 (A:314-348)
Exon 1.8 (A:348-377)
Exon 1.9 (A:377-450)
Exon 1.10 (A:450-510)
Exon 1.11a (A:510-543)
Exon 1.12 (A:543-572)
Exon 1.22 (A:572-705)
Exon 1.23 (A:705-764)
Exon 1.24 (A:764-798)
Exon 1.25 (A:798-827)
Exon 1.26 (A:827-900)
Exon 1.27 (A:900-960)
Exon 1.28a (A:960-993)
Exon 1.29 (A:993-1022)
Exon 1.30 (A:1022-1155)
Exon 1.31 (A:1155-1214)
Exon 1.32 (A:1214-1248)
Exon 1.33 (A:1248-1277)
Exon 1.34 (A:1277-1353)
Exon 1.35 (A:1353-1413)
Exon 1.36 (A:1413-1446)
Exon 1.37 (A:1446-1475)
Exon 1.38b (A:1475-1608)
Exon 1.39 (A:1608-1667)
Exon 1.40 (A:1667-1701)
Exon 1.41 (A:1701-1730)
Exon 1.42 (A:1730-1806)
Exon 1.43 (A:1806-1865)
Exon 1.44 (A:1865-1927)
Exon 1.45 (A:1927-1931)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1c/1.2
02: Boundary 1.2/1.3a
03: Boundary 1.3a/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11a
11: Boundary 1.11a/1.12
12: Boundary 1.12/1.22
13: Boundary 1.22/1.23
14: Boundary 1.23/1.24
15: Boundary 1.24/1.25
16: Boundary 1.25/1.26
17: Boundary 1.26/1.27
18: Boundary 1.27/1.28a
19: Boundary 1.28a/1.29
20: Boundary 1.29/1.30
21: Boundary 1.30/1.31
22: Boundary 1.31/1.32
23: Boundary 1.32/1.33
24: Boundary 1.33/1.34
25: Boundary 1.34/1.35
26: Boundary 1.35/1.36
27: Boundary 1.36/1.37
28: Boundary 1.37/1.38b
29: Boundary 1.38b/1.39
30: Boundary 1.39/1.40
31: Boundary 1.40/1.41
32: Boundary 1.41/1.42
33: Boundary 1.42/1.43
34: Boundary 1.43/1.44
35: Boundary 1.44/1.45
36: Boundary 1.45/1.46
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000367053
1c
ENSE00001443318
chr1:
207669502-207669733
232
CR1_HUMAN
1-41
41
0
-
-
1.2
ENST00000367053
2
ENSE00001653333
chr1:
207679249-207679428
180
CR1_HUMAN
41-101
61
1
A:1-60
60
1.3a
ENST00000367053
3a
ENSE00001772738
chr1:
207680059-207680158
100
CR1_HUMAN
101-134
34
1
A:60-93
34
1.4
ENST00000367053
4
ENSE00001701427
chr1:
207684914-207684999
86
CR1_HUMAN
134-163
30
1
A:93-122
30
1.5
ENST00000367053
5
ENSE00001655656
chr1:
207696956-207697354
399
CR1_HUMAN
163-296
134
1
A:122-255
134
1.6
ENST00000367053
6
ENSE00001645921
chr1:
207700098-207700274
177
CR1_HUMAN
296-355
60
1
A:255-314
60
1.7
ENST00000367053
7
ENSE00001599723
chr1:
207700366-207700468
103
CR1_HUMAN
355-389
35
1
A:314-348
35
1.8
ENST00000367053
8
ENSE00001691683
chr1:
207702061-207702146
86
CR1_HUMAN
389-418
30
1
A:348-377
30
1.9
ENST00000367053
9
ENSE00001728445
chr1:
207705525-207705743
219
CR1_HUMAN
418-491
74
1
A:377-450
74
1.10
ENST00000367053
10
ENSE00001753192
chr1:
207706754-207706933
180
CR1_HUMAN
491-551
61
1
A:450-510
61
1.11a
ENST00000367053
11a
ENSE00001689484
chr1:
207707542-207707641
100
CR1_HUMAN
551-584
34
1
A:510-543
34
1.12
ENST00000367053
12
ENSE00001657834
chr1:
207713326-207713411
86
CR1_HUMAN
584-613
30
1
A:543-572
30
1.22
ENST00000367053
22
ENSE00001741034
chr1:
207734084-207734482
399
CR1_HUMAN
613-746
134
1
A:572-705
134
1.23
ENST00000367053
23
ENSE00001636982
chr1:
207737209-207737385
177
CR1_HUMAN
746-805
60
1
A:705-764
60
1.24
ENST00000367053
24
ENSE00001679418
chr1:
207737477-207737579
103
CR1_HUMAN
805-839
35
1
A:764-798
35
1.25
ENST00000367053
25
ENSE00001664101
chr1:
207739183-207739268
86
CR1_HUMAN
839-868
30
1
A:798-827
30
1.26
ENST00000367053
26
ENSE00001760896
chr1:
207741169-207741387
219
CR1_HUMAN
868-941
74
1
A:827-900
74
1.27
ENST00000367053
27
ENSE00001615740
chr1:
207742404-207742583
180
CR1_HUMAN
941-1001
61
1
A:900-960
61
1.28a
ENST00000367053
28a
ENSE00001766771
chr1:
207743192-207743291
100
CR1_HUMAN
1001-1034
34
1
A:960-993
34
1.29
ENST00000367053
29
ENSE00001735040
chr1:
207748940-207749025
86
CR1_HUMAN
1034-1063
30
1
A:993-1022
30
1.30
ENST00000367053
30
ENSE00001745761
chr1:
207751150-207751548
399
CR1_HUMAN
1063-1196
134
1
A:1022-1155
134
1.31
ENST00000367053
31
ENSE00001674858
chr1:
207753585-207753761
177
CR1_HUMAN
1196-1255
60
1
A:1155-1214
60
1.32
ENST00000367053
32
ENSE00001628329
chr1:
207753856-207753958
103
CR1_HUMAN
1255-1289
35
1
A:1214-1248
35
1.33
ENST00000367053
33
ENSE00001800449
chr1:
207755263-207755348
86
CR1_HUMAN
1289-1318
30
1
A:1248-1277
30
1.34
ENST00000367053
34
ENSE00001649667
chr1:
207757994-207758221
228
CR1_HUMAN
1318-1394
77
1
A:1277-1353
77
1.35
ENST00000367053
35
ENSE00001443342
chr1:
207760731-207760910
180
CR1_HUMAN
1394-1454
61
1
A:1353-1413
61
1.36
ENST00000367053
36
ENSE00001443341
chr1:
207762020-207762119
100
CR1_HUMAN
1454-1487
34
1
A:1413-1446
34
1.37
ENST00000367053
37
ENSE00001443339
chr1:
207780596-207780681
86
CR1_HUMAN
1487-1516
30
1
A:1446-1475
30
1.38b
ENST00000367053
38b
ENSE00001443338
chr1:
207782635-207783033
399
CR1_HUMAN
1516-1649
134
1
A:1475-1608
134
1.39
ENST00000367053
39
ENSE00001665886
chr1:
207785022-207785198
177
CR1_HUMAN
1649-1708
60
1
A:1608-1667
60
1.40
ENST00000367053
40
ENSE00001722915
chr1:
207785284-207785386
103
CR1_HUMAN
1708-1742
35
1
A:1667-1701
35
1.41
ENST00000367053
41
ENSE00001687254
chr1:
207787749-207787834
86
CR1_HUMAN
1742-1771
30
1
A:1701-1730
30
1.42
ENST00000367053
42
ENSE00001650414
chr1:
207789920-207790147
228
CR1_HUMAN
1771-1847
77
1
A:1730-1806
77
1.43
ENST00000367053
43
ENSE00001443333
chr1:
207791416-207791592
177
CR1_HUMAN
1847-1906
60
1
A:1806-1865
60
1.44
ENST00000367053
44
ENSE00001443332
chr1:
207793225-207793410
186
CR1_HUMAN
1906-1968
63
1
A:1865-1927
63
1.45
ENST00000367053
45
ENSE00001648710
chr1:
207795318-207795341
24
CR1_HUMAN
1968-1976
9
1
A:1927-1931
5
1.46
ENST00000367053
46
ENSE00001443330
chr1:
207796338-207796413
76
CR1_HUMAN
1976-2001
26
0
-
-
1.47a
ENST00000367053
47a
ENSE00001443329
chr1:
207803862-207803966
105
CR1_HUMAN
2001-2036
36
0
-
-
1.48c
ENST00000367053
48c
ENSE00001443328
chr1:
207812742-207813992
1251
CR1_HUMAN
2036-2039
4
0
-
-
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