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2Q7R
Asym. Unit
Info
Asym.Unit (157 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FLAP WITH AN IODINATED ANALOG OF MK-591
Authors
:
A. D. Ferguson
Date
:
07 Jun 07 (Deposition) - 21 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Flap, Mapeg, Membrane Protein, Lipid Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Ferguson, B. M. Mckeever, S. Xu, D. Wisniewski, D. K. Miller, T. T. Yamin, R. H. Spencer, L. Chu, F. Ujjainwalla, B. R. Cunningham, J. F. Evans, J. W. Becker
Crystal Structure Of Inhibitor-Bound Human 5-Lipoxygenase-Activating Protein.
Science V. 317 510 2007
(for further references see the
PDB file header
)
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close entry info
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: 3-[3-(3,3-DIMETHYLBUTANOYL)-1-(4-I... (3CSa)
1b: 3-[3-(3,3-DIMETHYLBUTANOYL)-1-(4-I... (3CSb)
1c: 3-[3-(3,3-DIMETHYLBUTANOYL)-1-(4-I... (3CSc)
1d: 3-[3-(3,3-DIMETHYLBUTANOYL)-1-(4-I... (3CSd)
1e: 3-[3-(3,3-DIMETHYLBUTANOYL)-1-(4-I... (3CSe)
1f: 3-[3-(3,3-DIMETHYLBUTANOYL)-1-(4-I... (3CSf)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3CS
6
Ligand/Ion
3-[3-(3,3-DIMETHYLBUTANOYL)-1-(4-IODOBENZYL)-5-(QUINOLIN-2-YLMETHOXY)-1H-INDOL-2-YL]-2,2-DIMETHYLPROPANOIC ACID
2
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:21 , ASN A:23 , GLY A:24 , PHE A:25 , ALA A:27 , ASP C:62 , THR C:66 , ILE C:113 , PHE C:114 , ILE C:119 , LEU C:120 , PHE C:123
BINDING SITE FOR RESIDUE 3CS C 501
2
AC2
SOFTWARE
ASP B:62 , ALA B:63 , PHE B:114 , LYS B:116 , ILE B:119 , LEU B:120 , PHE B:123 , VAL C:21 , ASN C:23 , GLY C:24 , PHE C:25 , ALA C:27
BINDING SITE FOR RESIDUE 3CS B 502
3
AC3
SOFTWARE
ASP A:62 , LYS A:116 , ILE A:119 , LEU A:120 , PHE A:123 , VAL B:21 , ASN B:23 , GLY B:24 , PHE B:25 , ALA B:27 , HIS B:28
BINDING SITE FOR RESIDUE 3CS A 503
4
AC4
SOFTWARE
VAL D:21 , ASN D:23 , GLY D:24 , PHE D:25 , ALA D:27 , ASP F:62 , ALA F:63 , PHE F:114 , LYS F:116 , ILE F:119 , LEU F:120 , PHE F:123
BINDING SITE FOR RESIDUE 3CS F 504
5
AC5
SOFTWARE
ASP D:62 , ALA D:63 , THR D:66 , ILE D:113 , LYS D:116 , ILE D:119 , LEU D:120 , PHE D:123 , VAL E:21 , ASN E:23 , GLY E:24 , PHE E:25 , ALA E:27
BINDING SITE FOR RESIDUE 3CS D 505
6
AC6
SOFTWARE
ASP E:62 , TYR E:112 , LYS E:116 , ILE E:119 , LEU E:120 , PHE E:123 , VAL F:21 , ASN F:23 , GLY F:24 , PHE F:25 , ALA F:27 , HIS F:28
BINDING SITE FOR RESIDUE 3CS E 506
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: FLAP_GST2_LTC4S (A:46-60,B:46-60,C:46-60,D:46-60,E:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAP_GST2_LTC4S
PS01297
FLAP/GST2/LTC4S family signature.
AL5AP_HUMAN
46-60
6
A:46-60
B:46-60
C:46-60
D:46-60
E:46-60
F:46-60
[
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]
Exons
(5, 30)
Info
All Exons
Exon 1.1 (A:1-24 | B:1-24 | C:1-24 | D:1-24 ...)
Exon 1.3a (A:24-57 | B:24-57 | C:24-57 | D:24...)
Exon 1.4 (A:57-81 | B:57-81 | C:57-81 | D:57...)
Exon 1.5 (A:81-108 | B:81-108 | C:81-108 | D...)
Exon 1.6 (A:108-140 | B:108-148 | C:108-149 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.3a
3: Boundary 1.3a/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000380490
1
ENSE00001485220
chr13:
31309645-31309812
168
AL5AP_HUMAN
1-24
24
6
A:1-24
B:1-24
C:1-24
D:1-24
E:1-24
F:1-24
24
24
24
24
24
24
1.3a
ENST00000380490
3a
ENSE00000906667
chr13:
31318197-31318296
100
AL5AP_HUMAN
24-57
34
6
A:24-57
B:24-57
C:24-57
D:24-57
E:24-57
F:24-57
34
34
34
34
34
34
1.4
ENST00000380490
4
ENSE00000906668
chr13:
31326189-31326259
71
AL5AP_HUMAN
57-81
25
6
A:57-81
B:57-81
C:57-81
D:57-81
E:57-81
F:57-81
25
25
25
25
25
25
1.5
ENST00000380490
5
ENSE00000906669
chr13:
31330081-31330162
82
AL5AP_HUMAN
81-108
28
6
A:81-108
B:81-108
C:81-108
D:81-108
E:81-108
F:81-108
28
28
28
28
28
28
1.6
ENST00000380490
6
ENSE00001093601
chr13:
31338081-31338556
476
AL5AP_HUMAN
108-161
54
6
A:108-140
B:108-148
C:108-149
D:108-148
E:108-140
F:108-149
33
41
42
41
33
42
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2q7ra1 (A:1-139)
1b: SCOP_d2q7rb1 (B:1-139)
1c: SCOP_d2q7rc1 (C:1-139)
1d: SCOP_d2q7rd1 (D:1-139)
1e: SCOP_d2q7re1 (E:1-139)
1f: SCOP_d2q7rf1 (F:1-139)
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Classes
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)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
MAPEG domain-like
(9)
Superfamily
:
MAPEG domain-like
(9)
Family
:
MAPEG domain
(7)
Protein domain
:
Arachidonate 5-lipoxygenase-activating protein, FLAP
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2q7ra1
A:1-139
1b
d2q7rb1
B:1-139
1c
d2q7rc1
C:1-139
1d
d2q7rd1
D:1-139
1e
d2q7re1
E:1-139
1f
d2q7rf1
F:1-139
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2q7rB00 (B:2-148)
1b: CATH_2q7rD00 (D:2-148)
1c: CATH_2q7rC00 (C:2-149)
1d: CATH_2q7rF00 (F:2-149)
1e: CATH_2q7rA00 (A:2-140)
1f: CATH_2q7rE00 (E:2-140)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
MAPEG domain-like
(7)
Human (Homo sapiens)
(6)
1a
2q7rB00
B:2-148
1b
2q7rD00
D:2-148
1c
2q7rC00
C:2-149
1d
2q7rF00
F:2-149
1e
2q7rA00
A:2-140
1f
2q7rE00
E:2-140
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_MAPEG_2q7rF01 (F:5-136)
1b: PFAM_MAPEG_2q7rF02 (F:5-136)
1c: PFAM_MAPEG_2q7rF03 (F:5-136)
1d: PFAM_MAPEG_2q7rF04 (F:5-136)
1e: PFAM_MAPEG_2q7rF05 (F:5-136)
1f: PFAM_MAPEG_2q7rF06 (F:5-136)
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Clans
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(
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(
)
(
)
Clan
:
no clan defined [family: MAPEG]
(6)
Family
:
MAPEG
(6)
Homo sapiens (Human)
(6)
1a
MAPEG-2q7rF01
F:5-136
1b
MAPEG-2q7rF02
F:5-136
1c
MAPEG-2q7rF03
F:5-136
1d
MAPEG-2q7rF04
F:5-136
1e
MAPEG-2q7rF05
F:5-136
1f
MAPEG-2q7rF06
F:5-136
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