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2Q6H
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF LEUT COMPLEXED WITH L-LEUCINE, SODIUM, AND CLOMIPRAMINE
Authors
:
S. K. Singh, A. Yamashita, E. Gouaux
Date
:
05 Jun 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Membrane Protein, Neurotransmitter Sodium Symporter, Occluded, Tricyclic Antidepressant, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Singh, A. Yamashita, E. Gouaux
Antidepressant Binding Site In A Bacterial Homologue Of Neurotransmitter Transporters.
Nature V. 448 952 2007
[
close entry info
]
Hetero Components
(4, 10)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
2a: 3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-... (CXXa)
2b: 3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-... (CXXb)
3a: LEUCINE (LEUa)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
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Label:
No.
Name
Count
Type
Full Name
1
BOG
5
Ligand/Ion
B-OCTYLGLUCOSIDE
2
CXX
2
Ligand/Ion
3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE
3
LEU
1
Mod. Amino Acid
LEUCINE
4
NA
2
Ligand/Ion
SODIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:53 , ARG A:142 , GLU A:146 , PRO A:445 , ARG A:446 , TYR A:448 , HOH A:933 , HOH A:940 , HOH A:989
BINDING SITE FOR RESIDUE BOG A 701
02
AC2
SOFTWARE
PHE A:167 , ARG A:438 , GLY A:439 , HOH A:925
BINDING SITE FOR RESIDUE BOG A 702
03
AC3
SOFTWARE
PRO A:164 , LEU A:166 , TYR A:169 , HIS A:391 , PHE A:395 , BOG A:704
BINDING SITE FOR RESIDUE BOG A 703
04
AC4
SOFTWARE
LYS A:163 , HIS A:391 , LEU A:392 , PHE A:395 , TRP A:484 , PHE A:488 , BOG A:703 , BOG A:705 , HOH A:982
BINDING SITE FOR RESIDUE BOG A 704
05
AC5
SOFTWARE
ILE A:161 , PHE A:395 , LEU A:396 , LYS A:431 , MET A:476 , GLU A:477 , GLU A:478 , THR A:479 , VAL A:483 , TRP A:484 , ARG A:487 , BOG A:704 , HOH A:978
BINDING SITE FOR RESIDUE BOG A 705
06
AC6
SOFTWARE
GLY A:20 , VAL A:23 , GLY A:24 , ALA A:351 , THR A:354 , SER A:355
BINDING SITE FOR RESIDUE NA A 751
07
AC7
SOFTWARE
ALA A:22 , ASN A:27 , THR A:254 , ASN A:286 , LEU A:601
BINDING SITE FOR RESIDUE NA A 752
08
AC8
SOFTWARE
ASN A:21 , ALA A:22 , GLY A:24 , LEU A:25 , GLY A:26 , ASN A:27 , TYR A:108 , PHE A:253 , THR A:254 , SER A:256 , PHE A:259 , NA A:752
BINDING SITE FOR RESIDUE LEU A 601
09
AC9
SOFTWARE
ARG A:30 , GLN A:34 , PHE A:320 , ASP A:401 , ASP A:404
BINDING SITE FOR RESIDUE CXX A 801
10
BC1
SOFTWARE
ILE A:178 , SER A:181 , GLY A:190 , ARG A:193 , PHE A:194 , ILE A:197 , PHE A:350
BINDING SITE FOR RESIDUE CXX A 802
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2q6ha_ (A:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
SNF-like
(42)
Superfamily
:
SNF-like
(42)
Family
:
SNF-like
(42)
Protein domain
:
Na(+):neurotransmitter symporter homologue LeuT
(35)
Aquifex aeolicus [TaxId: 63363]
(35)
1a
d2q6ha_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SNF_2q6hA01 (A:167-508)
1b: PFAM_SNF_2q6hA02 (A:167-508)
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)
(
)
Clan
:
no clan defined [family: SNF]
(5)
Family
:
SNF
(5)
Aquifex aeolicus
(5)
1a
SNF-2q6hA01
A:167-508
1b
SNF-2q6hA02
A:167-508
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Chain A
Asymmetric Unit 1
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