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2Q5Y
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HNUP98
Authors
:
Y. Sun, H. C. Guo
Date
:
03 Jun 07 (Deposition) - 14 Oct 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nup98, Nucleoporin, Autoproteolysis, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Sun, H. C. Guo
Structural Constraints On Autoprocessing Of The Human Nucleoporin Nup98.
Protein Sci. V. 17 494 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NUP_C (A:721-863,C:721-863)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUP_C
PS51434
NUP C-terminal domain profile.
NUP98_HUMAN
738-880
2
A:721-863
C:721-863
[
close PROSITE info
]
Exons
(5, 10)
Info
All Exons
Exon 1.16 (A:712-716 | C:712-716)
Exon 1.17b (A:716-754 | C:716-754)
Exon 1.18b (A:754-800 | C:754-800 (gaps))
Exon 1.19 (A:800-859 | C:800-859)
Exon 1.20a (A:860-863 | C:860-863)
View:
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All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17b
3: Boundary 1.17b/1.18b
4: Boundary 1.18b/1.19
5: Boundary 1.19/1.20a
6: Boundary 1.20a/1.21a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000359171
1b
ENSE00001266767
chr11:
3818892-3818630
263
NUP98_HUMAN
-
0
0
-
-
1.2
ENST00000359171
2
ENSE00001331927
chr11:
3803375-3803272
104
NUP98_HUMAN
1-26
26
0
-
-
1.3
ENST00000359171
3
ENSE00001266763
chr11:
3800487-3800386
102
NUP98_HUMAN
26-60
35
0
-
-
1.4b
ENST00000359171
4b
ENSE00001266760
chr11:
3800279-3800103
177
NUP98_HUMAN
60-119
60
0
-
-
1.5b
ENST00000359171
5b
ENSE00001057882
chr11:
3797251-3797112
140
NUP98_HUMAN
119-165
47
0
-
-
1.6
ENST00000359171
6
ENSE00000891053
chr11:
3794969-3794862
108
NUP98_HUMAN
166-201
36
0
-
-
1.7
ENST00000359171
7
ENSE00000891055
chr11:
3793158-3792978
181
NUP98_HUMAN
202-262
61
0
-
-
1.8a
ENST00000359171
8a
ENSE00001112039
chr11:
3789974-3789811
164
NUP98_HUMAN
262-316
55
0
-
-
1.9a
ENST00000359171
9a
ENSE00000891059
chr11:
3784269-3784132
138
NUP98_HUMAN
317-362
46
0
-
-
1.10b
ENST00000359171
10b
ENSE00001485193
chr11:
3781856-3781718
139
NUP98_HUMAN
363-409
47
0
-
-
1.11
ENST00000359171
11
ENSE00001057883
chr11:
3774638-3774546
93
NUP98_HUMAN
409-440
32
0
-
-
1.12a
ENST00000359171
12a
ENSE00001057881
chr11:
3765879-3765739
141
NUP98_HUMAN
440-487
48
0
-
-
1.13
ENST00000359171
13
ENSE00001057868
chr11:
3756554-3756421
134
NUP98_HUMAN
487-531
45
0
-
-
1.14a
ENST00000359171
14a
ENSE00001057874
chr11:
3752808-3752621
188
NUP98_HUMAN
532-594
63
0
-
-
1.15
ENST00000359171
15
ENSE00002140746
chr11:
3746449-3746333
117
NUP98_HUMAN
594-633
40
0
-
-
1.16
ENST00000359171
16
ENSE00001057846
chr11:
3744685-3744387
299
NUP98_HUMAN
633-733
101
2
A:712-716
C:712-716
5
5
1.17b
ENST00000359171
17b
ENSE00001057869
chr11:
3742055-3741942
114
NUP98_HUMAN
733-771
39
2
A:716-754
C:716-754
39
39
1.18b
ENST00000359171
18b
ENSE00001057877
chr11:
3740780-3740642
139
NUP98_HUMAN
771-817
47
2
A:754-800
C:754-800 (gaps)
47
47
1.19
ENST00000359171
19
ENSE00001057851
chr11:
3735225-3735048
178
NUP98_HUMAN
817-876
60
2
A:800-859
C:800-859
60
60
1.20a
ENST00000359171
20a
ENSE00001057857
chr11:
3733958-3733794
165
NUP98_HUMAN
877-931
55
2
A:860-863
C:860-863
4
4
1.21a
ENST00000359171
21a
ENSE00000988546
chr11:
3727857-3727675
183
NUP98_HUMAN
932-992
61
0
-
-
1.22
ENST00000359171
22
ENSE00001266871
chr11:
3726586-3726430
157
NUP98_HUMAN
993-1045
53
0
-
-
1.23b
ENST00000359171
23b
ENSE00001350501
chr11:
3724122-3723693
430
NUP98_HUMAN
1045-1188
144
0
-
-
1.24a
ENST00000359171
24a
ENSE00001266800
chr11:
3722069-3721840
230
NUP98_HUMAN
1188-1265
78
0
-
-
1.25a
ENST00000359171
25a
ENSE00000891085
chr11:
3720578-3720312
267
NUP98_HUMAN
1265-1354
90
0
-
-
1.27c
ENST00000359171
27c
ENSE00001057884
chr11:
3716836-3716679
158
NUP98_HUMAN
1354-1406
53
0
-
-
1.28a
ENST00000359171
28a
ENSE00001266845
chr11:
3714605-3714462
144
NUP98_HUMAN
1407-1454
48
0
-
-
1.29
ENST00000359171
29
ENSE00001057852
chr11:
3712719-3712577
143
NUP98_HUMAN
1455-1502
48
0
-
-
1.30b
ENST00000359171
30b
ENSE00001120869
chr11:
3707424-3707203
222
NUP98_HUMAN
1502-1576
75
0
-
-
1.31
ENST00000359171
31
ENSE00001300941
chr11:
3704671-3704430
242
NUP98_HUMAN
1576-1657
82
0
-
-
1.32d
ENST00000359171
32d
ENSE00001777516
chr11:
3700938-3700780
159
NUP98_HUMAN
1657-1710
54
0
-
-
1.33
ENST00000359171
33
ENSE00001623583
chr11:
3699832-3699814
19
NUP98_HUMAN
1710-1716
7
0
-
-
1.34c
ENST00000359171
34c
ENSE00001790157
chr11:
3697847-3697805
43
NUP98_HUMAN
1716-1729
14
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2q5yA00 (A:712-863)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
c-terminal autoproteolytic domain of nucleoporin nup98
(2)
Homologous Superfamily
:
c-terminal autoproteolytic domain of nucleoporin nup98
(2)
Human (Homo sapiens)
(2)
1a
2q5yA00
A:712-863
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Nucleoporin2_2q5yC01 (C:723-863)
1b: PFAM_Nucleoporin2_2q5yC02 (C:723-863)
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(
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(
)
(
)
Clan
:
no clan defined [family: Nucleoporin2]
(5)
Family
:
Nucleoporin2
(5)
Homo sapiens (Human)
(3)
1a
Nucleoporin2-2q5yC01
C:723-863
1b
Nucleoporin2-2q5yC02
C:723-863
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Asym.Unit (56 KB)
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