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2Q50
Asym. Unit
Info
Asym.Unit (1.6 MB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (104 KB)
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Models
(8 )
Title
:
ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF A GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Authors
:
E. J. Levin, D. A. Kondrashov, G. E. Wesenberg, G. N. Phillips Jr. , Cent Eukaryotic Structural Genomics (Cesg)
Date
:
31 May 07 (Deposition) - 19 Jun 07 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D (8 x)
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ensemble Refinement, Refinement Methodology Development, Q9Ubq7, Glyoxylate Reductase, Hydroxypyruvate Reductase, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. J. Levin, D. A. Kondrashov, G. E. Wesenberg, G. N. Phillips
Ensemble Refinement Of Protein Crystal Structures: Validation And Application.
Structure V. 15 1040 2007
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Hetero Components
(1, 20)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
20
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_032762 (R170Q, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032762
R
170
Q
GRHPR_HUMAN
Polymorphism
12002324
A/B/C/D
R
170
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: D_2_HYDROXYACID_DH_3 (A:234-250,B:234-250,C:234-250,D:23...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_2_HYDROXYACID_DH_3
PS00671
D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
GRHPR_HUMAN
234-250
4
A:234-250
B:234-250
C:234-250
D:234-250
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Exons
(9, 36)
Info
All Exons
Exon 1.1b (A:6-28 | B:6-28 | C:6-28 | D:6-28)
Exon 1.2 (A:28-72 | B:28-72 | C:28-72 | D:28...)
Exon 1.3a (A:72-96 | B:72-96 | C:72-96 | D:72...)
Exon 1.3c (A:96-135 | B:96-135 | C:96-135 | D...)
Exon 1.4b (A:135-165 | B:135-165 | C:135-165 ...)
Exon 1.4f (A:165-200 | B:165-200 | C:165-200 ...)
Exon 1.4h (A:200-245 | B:200-245 | C:200-245 ...)
Exon 1.4l (A:245-289 | B:245-289 | C:245-289 ...)
Exon 1.6e (A:289-326 | B:289-326 | C:289-326 ...)
View:
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All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.3a
04: Boundary 1.3a/1.3c
05: Boundary 1.3c/1.4b
06: Boundary 1.4b/1.4f
07: Boundary 1.4f/1.4h
08: Boundary 1.4h/1.4l
09: Boundary 1.4l/1.6e
10: Boundary 1.6e/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000318158
1b
ENSE00001934486
chr9:
37422663-37422830
168
GRHPR_HUMAN
1-28
28
4
A:6-28
B:6-28
C:6-28
D:6-28
23
23
23
23
1.2
ENST00000318158
2
ENSE00001258021
chr9:
37424842-37424972
131
GRHPR_HUMAN
28-72
45
4
A:28-72
B:28-72
C:28-72
D:28-72
45
45
45
45
1.3a
ENST00000318158
3a
ENSE00001258055
chr9:
37425919-37425991
73
GRHPR_HUMAN
72-96
25
4
A:72-96
B:72-96
C:72-96
D:72-96
25
25
25
25
1.3c
ENST00000318158
3c
ENSE00001257930
chr9:
37426535-37426651
117
GRHPR_HUMAN
96-135
40
4
A:96-135
B:96-135
C:96-135
D:96-135
40
40
40
40
1.4b
ENST00000318158
4b
ENSE00001257990
chr9:
37428481-37428569
89
GRHPR_HUMAN
135-165
31
4
A:135-165
B:135-165
C:135-165
D:135-165
31
31
31
31
1.4f
ENST00000318158
4f
ENSE00001149947
chr9:
37429729-37429833
105
GRHPR_HUMAN
165-200
36
4
A:165-200
B:165-200
C:165-200
D:165-200
36
36
36
36
1.4h
ENST00000318158
4h
ENSE00001149942
chr9:
37430508-37430643
136
GRHPR_HUMAN
200-245
46
4
A:200-245
B:200-245
C:200-245
D:200-245
46
46
46
46
1.4l
ENST00000318158
4l
ENSE00000928324
chr9:
37432005-37432135
131
GRHPR_HUMAN
245-289
45
4
A:245-289
B:245-289
C:245-289
D:245-289
45
45
45
45
1.6e
ENST00000318158
6e
ENSE00001952551
chr9:
37436658-37436987
330
GRHPR_HUMAN
289-328
40
4
A:289-326
B:289-326
C:289-326
D:289-326
38
38
38
38
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2q50A02 (A:106-294)
1b: CATH_2q50B02 (B:106-294)
1c: CATH_2q50C02 (C:106-294)
1d: CATH_2q50D02 (D:106-294)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
2q50A02
A:106-294
1b
2q50B02
B:106-294
1c
2q50C02
C:106-294
1d
2q50D02
D:106-294
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_2_Hacid_dh_2q50D01 (D:9-326)
1b: PFAM_2_Hacid_dh_2q50D02 (D:9-326)
1c: PFAM_2_Hacid_dh_2q50D03 (D:9-326)
1d: PFAM_2_Hacid_dh_2q50D04 (D:9-326)
2a: PFAM_2_Hacid_dh_C_2q50D05 (D:116-295)
2b: PFAM_2_Hacid_dh_C_2q50D06 (D:116-295)
2c: PFAM_2_Hacid_dh_C_2q50D07 (D:116-295)
2d: PFAM_2_Hacid_dh_C_2q50D08 (D:116-295)
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Clans
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Form_Glyc_dh
(56)
Family
:
2-Hacid_dh
(21)
Homo sapiens (Human)
(3)
1a
2-Hacid_dh-2q50D01
D:9-326
1b
2-Hacid_dh-2q50D02
D:9-326
1c
2-Hacid_dh-2q50D03
D:9-326
1d
2-Hacid_dh-2q50D04
D:9-326
Clan
:
NADP_Rossmann
(1239)
Family
:
2-Hacid_dh_C
(23)
Homo sapiens (Human)
(3)
2a
2-Hacid_dh_C-2q50D05
D:116-295
2b
2-Hacid_dh_C-2q50D06
D:116-295
2c
2-Hacid_dh_C-2q50D07
D:116-295
2d
2-Hacid_dh_C-2q50D08
D:116-295
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