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2Q3Z
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (219 KB)
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(1)
Title
:
TRANSGLUTAMINASE 2 UNDERGOES LARGE CONFORMATIONAL CHANGE UPON ACTIVATION
Authors
:
P. Strop, D. M. Pinkas, A. T. Brunger, C. Khosla
Date
:
30 May 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,X
Biol. Unit 1: A,X (1x)
Biol. Unit 2: A,X (2x)
Keywords
:
Transglutaminase 2, Tissue Transglutaminase, Tg2, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Pinkas, P. Strop, A. T. Brunger, C. Khosla
Transglutaminase 2 Undergoes A Large Conformational Change Upon Activation
Plos Biol. V. 5 E327 2007
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: AMINO GROUP (NH2a)
3a: 5-OXO-L-NORLEUCINE (ONLa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
3
ONL
1
Mod. Amino Acid
5-OXO-L-NORLEUCINE
4
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:202 , ARG A:222 , GLY A:367 , THR A:368
BINDING SITE FOR RESIDUE SO4 A 688
2
AC2
SOFTWARE
LYS A:202 , ARG A:209 , TYR A:219 , HOH A:728 , HOH A:931 , HOH A:947
BINDING SITE FOR RESIDUE SO4 A 689
3
AC3
SOFTWARE
ARG A:80
BINDING SITE FOR RESIDUE SO4 A 690
4
AC4
SOFTWARE
ARG A:80 , ASP A:81 , ALA A:82 , HOH A:753 , HOH A:873
BINDING SITE FOR RESIDUE SO4 A 691
5
AC5
SOFTWARE
ARG A:478 , VAL A:479 , GLY A:480 , ARG A:580
BINDING SITE FOR RESIDUE SO4 A 692
[
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052553 (R76H, chain A, )
2: VAR_055357 (R214H, chain A, )
3: VAR_037998 (M330R, chain A, )
4: VAR_037999 (I331N, chain A, )
5: VAR_055359 (R436W, chain A, )
6: VAR_052554 (P536S, chain A, )
7: VAR_036554 (G660V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052553
R
76
H
TGM2_HUMAN
Polymorphism
41274720
A
R
76
H
2
UniProt
VAR_055357
R
214
H
TGM2_HUMAN
Polymorphism
45530133
A
R
214
H
3
UniProt
VAR_037998
M
330
R
TGM2_HUMAN
Unclassified
---
A
M
330
R
4
UniProt
VAR_037999
I
331
N
TGM2_HUMAN
Unclassified
---
A
I
331
N
5
UniProt
VAR_055359
R
436
W
TGM2_HUMAN
Polymorphism
45629036
A
R
436
W
6
UniProt
VAR_052554
P
536
S
TGM2_HUMAN
Polymorphism
45556333
A
P
536
S
7
UniProt
VAR_036554
G
660
V
TGM2_HUMAN
Unclassified
---
A
G
660
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TRANSGLUTAMINASES (A:275-292)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSGLUTAMINASES
PS00547
Transglutaminases active site.
TGM2_HUMAN
275-292
1
A:275-292
[
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Exons
(13, 13)
Info
All Exons
Exon 1.2a (A:1-4)
Exon 1.3b (A:4-64)
Exon 1.4a (A:64-145)
Exon 1.5b (A:145-184)
Exon 1.6 (A:185-227)
Exon 1.7b (A:228-287)
Exon 1.8 (A:287-332 (gaps))
Exon 1.9 (A:332-367)
Exon 1.10 (A:367-448 (gaps))
Exon 1.11a (A:448-539 (gaps))
Exon 1.12b (A:539-592)
Exon 1.13b (A:593-638)
Exon 1.14a (A:638-683)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.3b
03: Boundary 1.3b/1.4a
04: Boundary 1.4a/1.5b
05: Boundary 1.5b/1.6
06: Boundary 1.6/1.7b
07: Boundary 1.7b/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11a
11: Boundary 1.11a/1.12b
12: Boundary 1.12b/1.13b
13: Boundary 1.13b/1.14a
14: Boundary 1.14a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000361475
2a
ENSE00001922845
chr20:
36793774-36793591
184
TGM2_HUMAN
1-4
4
1
A:1-4
4
1.3b
ENST00000361475
3b
ENSE00000800527
chr20:
36790001-36789822
180
TGM2_HUMAN
4-64
61
1
A:4-64
61
1.4a
ENST00000361475
4a
ENSE00000661931
chr20:
36784491-36784249
243
TGM2_HUMAN
64-145
82
1
A:64-145
82
1.5b
ENST00000361475
5b
ENSE00000661930
chr20:
36779459-36779341
119
TGM2_HUMAN
145-184
40
1
A:145-184
40
1.6
ENST00000361475
6
ENSE00000800526
chr20:
36776491-36776363
129
TGM2_HUMAN
185-227
43
1
A:185-227
43
1.7b
ENST00000361475
7b
ENSE00000800525
chr20:
36775296-36775119
178
TGM2_HUMAN
228-287
60
1
A:228-287
60
1.8
ENST00000361475
8
ENSE00000661927
chr20:
36770601-36770466
136
TGM2_HUMAN
287-332
46
1
A:287-332 (gaps)
46
1.9
ENST00000361475
9
ENSE00000661926
chr20:
36769787-36769684
104
TGM2_HUMAN
332-367
36
1
A:332-367
36
1.10
ENST00000361475
10
ENSE00000661925
chr20:
36768056-36767814
243
TGM2_HUMAN
367-448
82
1
A:367-448 (gaps)
82
1.11a
ENST00000361475
11a
ENSE00000661924
chr20:
36766787-36766515
273
TGM2_HUMAN
448-539
92
1
A:448-539 (gaps)
92
1.12b
ENST00000361475
12b
ENSE00000661923
chr20:
36760902-36760742
161
TGM2_HUMAN
539-592
54
1
A:539-592
54
1.13b
ENST00000361475
13b
ENSE00000661922
chr20:
36759631-36759495
137
TGM2_HUMAN
593-638
46
1
A:593-638
46
1.14a
ENST00000361475
14a
ENSE00001904837
chr20:
36758771-36756863
1909
TGM2_HUMAN
638-687
50
1
A:638-683
46
[
close EXON info
]
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d2q3za1 (A:15-145)
2a: SCOP_d2q3za2 (A:472-585)
2b: SCOP_d2q3za3 (A:586-683)
3a: SCOP_d2q3za4 (A:146-461)
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Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Transglutaminase N-terminal domain
(17)
Protein domain
:
Transglutaminase N-terminal domain
(17)
Human (Homo sapiens), tissue isozyme [TaxId: 9606]
(3)
1a
d2q3za1
A:15-145
Superfamily
:
Transglutaminase, two C-terminal domains
(18)
Family
:
Transglutaminase, two C-terminal domains
(17)
Protein domain
:
Transglutaminase, two C-terminal domains
(17)
Human (Homo sapiens), tissue isozyme [TaxId: 9606]
(3)
2a
d2q3za2
A:472-585
2b
d2q3za3
A:586-683
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Transglutaminase core
(22)
Protein domain
:
Transglutaminase catalytic domain
(17)
Human (Homo sapiens), tissue isozyme [TaxId: 9606]
(3)
3a
d2q3za4
A:146-461
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_Transglut_C_2q3zA01 (A:587-683)
1b: PFAM_Transglut_C_2q3zA02 (A:587-683)
2a: PFAM_Transglut_core_2q3zA03 (A:256-359)
3a: PFAM_Transglut_N_2q3zA04 (A:5-124)
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Clans
(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Transglut_C
(8)
Homo sapiens (Human)
(8)
1a
Transglut_C-2q3zA01
A:587-683
1b
Transglut_C-2q3zA02
A:587-683
Clan
:
Peptidase_CA
(169)
Family
:
Transglut_core
(7)
Homo sapiens (Human)
(7)
2a
Transglut_core-2q3zA03
A:256-359
Clan
:
no clan defined [family: Transglut_N]
(7)
Family
:
Transglut_N
(7)
Homo sapiens (Human)
(7)
3a
Transglut_N-2q3zA04
A:5-124
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