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2Q3G
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
STRUCTURE OF THE PDZ DOMAIN OF HUMAN PDLIM7 BOUND TO A C-TERMINAL EXTENSION FROM HUMAN BETA-TROPOMYOSIN
Authors
:
C. Gileadi, E. Papagrigoriou, J. Elkins, N. Burgess-Brown, E. Salah, O. Gileadi, C. Umeano, G. Bunkoczi, F. Von Delft, J. Uppenberg, A. C. W. Pike, C. H. Arrowsmith, A. Edwards, J. Weigelt, M. Sundstrom, D. A. Doyle, Structural Genomics Consortium (Sgc)
Date
:
30 May 07 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.11
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Gileadi, E. Papagrigoriou, J. Elkins, N. Burgess-Brown, E. Salah, O. Gileadi, C. Umeano, G. Bunkoczi, F. Von Delft, J. Uppenberg, A. C. W. Pike, C. H. Arrowsmith, A. Edwards, J. Weigelt, M. Sundstrom, D. A. Doyle
Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-Terminal Extension From Human Beta-Tropomyosin
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:52 , ASP B:54 , GLY B:55 , SER B:78
BINDING SITE FOR RESIDUE CL B 601
2
AC2
SOFTWARE
PRO B:35 , GLY B:36 , ALA B:40 , GLN B:41
BINDING SITE FOR RESIDUE EDO B 1960
3
AC3
SOFTWARE
GLY A:43 , HOH A:3975 , HOH A:4058 , LYS B:69 , ALA B:72 , HOH B:2980 , HOH B:3079
BINDING SITE FOR RESIDUE EDO B 2960
4
AC4
SOFTWARE
LYS A:69 , ALA A:72 , HOH A:3978 , GLY B:43 , HOH B:2973 , HOH B:3064
BINDING SITE FOR RESIDUE EDO A 3960
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:9-84,B:9-84)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
PDLI7_HUMAN
9-85
2
A:9-84
B:9-84
[
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Exons
(4, 8)
Info
All Exons
Exon 1.2c (A:1-32 | B:1-32)
Exon 1.3b (A:33-83 | B:33-83)
Exon 1.4b (A:83-85 | B:83-85)
Exon 1.4g (A:86-88 | B:86-88)
View:
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All Exon Boundaries
1: Boundary 1.1d/1.2c
2: Boundary 1.2c/1.3b
3: Boundary 1.3b/1.4b
4: Boundary 1.4b/1.4g
5: Boundary 1.4g/1.5f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000355841
1d
ENSE00001515758
chr5:
176924584-176924529
56
PDLI7_HUMAN
-
0
0
-
-
1.2c
ENST00000355841
2c
ENSE00002200659
chr5:
176923524-176923418
107
PDLI7_HUMAN
1-32
32
2
A:1-32
B:1-32
32
32
1.3b
ENST00000355841
3b
ENSE00001419643
chr5:
176919678-176919527
152
PDLI7_HUMAN
33-83
51
2
A:33-83
B:33-83
51
51
1.4b
ENST00000355841
4b
ENSE00001400168
chr5:
176919436-176919406
31
PDLI7_HUMAN
83-93
11
2
A:83-85
B:83-85
3
3
1.4g
ENST00000355841
4g
ENSE00001411967
chr5:
176918926-176918808
119
PDLI7_HUMAN
94-133
40
2
A:86-88
B:86-88
3
3
1.5f
ENST00000355841
5f
ENSE00002167730
chr5:
176918147-176918011
137
PDLI7_HUMAN
133-179
47
0
-
-
1.6
ENST00000355841
6
ENSE00001627630
chr5:
176917907-176917871
37
PDLI7_HUMAN
179-191
13
0
-
-
1.7e
ENST00000355841
7e
ENSE00001774882
chr5:
176916833-176916772
62
PDLI7_HUMAN
191-212
22
0
-
-
1.8
ENST00000355841
8
ENSE00001725106
chr5:
176916628-176916394
235
PDLI7_HUMAN
212-290
79
0
-
-
1.9a
ENST00000355841
9a
ENSE00001748592
chr5:
176915249-176915069
181
PDLI7_HUMAN
290-350
61
0
-
-
1.11b
ENST00000355841
11b
ENSE00001672261
chr5:
176911191-176911071
121
PDLI7_HUMAN
351-391
41
0
-
-
1.12b
ENST00000355841
12b
ENSE00001766030
chr5:
176910983-176910868
116
PDLI7_HUMAN
391-429
39
0
-
-
1.13d
ENST00000355841
13d
ENSE00001864426
chr5:
176910731-176910397
335
PDLI7_HUMAN
430-457
28
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2q3ga_ (A:)
1b: SCOP_d2q3gb_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2q3ga_
A:
1b
d2q3gb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2q3gA00 (A:0-88)
1b: CATH_2q3gB00 (B:1-88)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2q3gA00
A:0-88
1b
2q3gB00
B:1-88
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDZ_2q3gB01 (B:3-82)
1b: PFAM_PDZ_2q3gB02 (B:3-82)
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Organisms
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2q3gB01
B:3-82
1b
PDZ-2q3gB02
B:3-82
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (72 KB)
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