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2Q3E
Asym. Unit
Info
Asym.Unit (943 KB)
Biol.Unit 1 (472 KB)
Biol.Unit 2 (468 KB)
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(1)
Title
:
STRUCTURE OF HUMAN UDP-GLUCOSE DEHYDROGENASE COMPLEXED WITH NADH AND UDP-GLUCOSE
Authors
:
K. L. Kavanagh, K. Guo, G. Bunkoczi, P. Savitsky, E. Pilka, C. Bhatia, C. G. Berridge, F. Von Delft, J. Wiegelt, C. Arrowsmith, M. Sundstrom, A U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
30 May 07 (Deposition) - 03 Jul 07 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Udp-Glucose 6-Dehydrogenase, Hexamer, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Egger, A. Chaikuad, K. L. Kavanagh, U. Oppermann, B. Nidetzky
Structure And Mechanism Of Human Udp-Glucose 6-Dehydrogenase.
J. Biol. Chem. V. 286 23877 2011
[
close entry info
]
Hetero Components
(3, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
2c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
2d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
2e: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIe)
2f: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIf)
2g: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIg)
2h: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIh)
2i: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIi)
2j: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIj)
2k: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIk)
2l: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIl)
3a: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGa)
3b: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGb)
3c: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGc)
3d: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGd)
3e: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGe)
3f: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGf)
3g: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGg)
3h: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGh)
3i: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGi)
3j: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGj)
3k: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGk)
3l: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
12
Ligand/Ion
CHLORIDE ION
2
NAI
12
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3
UPG
12
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-GLUCOSE
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:419
BINDING SITE FOR RESIDUE CL A 3001
02
AC2
SOFTWARE
MET G:419
BINDING SITE FOR RESIDUE CL G 3002
03
AC3
SOFTWARE
MET I:419
BINDING SITE FOR RESIDUE CL I 3003
04
AC4
SOFTWARE
MET F:419
BINDING SITE FOR RESIDUE CL F 3004
05
AC5
SOFTWARE
MET C:419
BINDING SITE FOR RESIDUE CL C 3005
06
AC6
SOFTWARE
MET D:419
BINDING SITE FOR RESIDUE CL D 3006
07
AC7
SOFTWARE
MET L:419
BINDING SITE FOR RESIDUE CL L 3007
08
AC8
SOFTWARE
MET K:419
BINDING SITE FOR RESIDUE CL K 3008
09
AC9
SOFTWARE
MET B:419
BINDING SITE FOR RESIDUE CL B 3009
10
BC1
SOFTWARE
MET H:419
BINDING SITE FOR RESIDUE CL H 3010
11
BC2
SOFTWARE
MET E:419
BINDING SITE FOR RESIDUE CL E 3011
12
BC3
SOFTWARE
MET J:419
BINDING SITE FOR RESIDUE CL J 3012
13
BC4
SOFTWARE
ILE A:10 , GLY A:11 , GLY A:13 , TYR A:14 , VAL A:15 , ASP A:36 , VAL A:37 , ARG A:41 , SER A:88 , VAL A:89 , ASN A:90 , THR A:91 , TYR A:108 , SER A:130 , THR A:131 , GLU A:161 , LEU A:163 , GLU A:165 , CYS A:276 , LYS A:279 , ARG A:346 , UPG A:501 , HOH A:3010 , HOH A:3020 , HOH A:3024 , HOH A:3033 , HOH A:3042 , HOH A:3045 , HOH A:3130 , HOH A:3136 , HOH A:3161
BINDING SITE FOR RESIDUE NAI A 500
14
BC5
SOFTWARE
GLU A:161 , PHE A:162 , LEU A:163 , ALA A:164 , GLU A:165 , LYS A:220 , ASN A:224 , ILE A:231 , PHE A:265 , LEU A:266 , LYS A:267 , SER A:269 , PHE A:272 , GLY A:273 , CYS A:276 , PHE A:277 , PHE A:338 , LYS A:339 , ARG A:442 , NAI A:500 , HOH A:3020 , HOH A:3021 , HOH A:3041 , HOH A:3042 , HOH A:3044 , HOH A:3052 , HOH A:3072 , HOH A:3085 , HOH A:3127 , ARG B:260
BINDING SITE FOR RESIDUE UPG A 501
15
BC6
SOFTWARE
ILE B:10 , GLY B:11 , GLY B:13 , TYR B:14 , VAL B:15 , ASP B:36 , VAL B:37 , ARG B:41 , SER B:88 , VAL B:89 , ASN B:90 , THR B:91 , TYR B:108 , SER B:130 , THR B:131 , GLU B:161 , LEU B:163 , GLU B:165 , CYS B:276 , LYS B:279 , ARG B:346 , UPG B:501 , HOH B:3013 , HOH B:3021 , HOH B:3024 , HOH B:3040 , HOH B:3059 , HOH B:3144 , HOH B:3155 , HOH B:3156
BINDING SITE FOR RESIDUE NAI B 500
16
BC7
SOFTWARE
ARG A:260 , GLU B:161 , PHE B:162 , LEU B:163 , ALA B:164 , GLU B:165 , LYS B:220 , ASN B:224 , ILE B:231 , PHE B:265 , LEU B:266 , LYS B:267 , SER B:269 , PHE B:272 , GLY B:273 , CYS B:276 , PHE B:277 , PHE B:338 , LYS B:339 , ARG B:442 , NAI B:500 , HOH B:3013 , HOH B:3019 , HOH B:3023 , HOH B:3024 , HOH B:3027 , HOH B:3036 , HOH B:3056 , HOH B:3077
BINDING SITE FOR RESIDUE UPG B 501
17
BC8
SOFTWARE
ILE C:10 , GLY C:11 , GLY C:13 , TYR C:14 , VAL C:15 , ASP C:36 , VAL C:37 , ARG C:41 , SER C:88 , VAL C:89 , ASN C:90 , THR C:91 , TYR C:108 , SER C:130 , THR C:131 , GLU C:161 , LEU C:163 , GLU C:165 , CYS C:276 , LYS C:279 , ARG C:346 , UPG C:501 , HOH C:3015 , HOH C:3019 , HOH C:3020 , HOH C:3021 , HOH C:3024 , HOH C:3066 , HOH C:3115 , HOH C:3130 , HOH C:3269
BINDING SITE FOR RESIDUE NAI C 500
18
BC9
SOFTWARE
GLU C:161 , PHE C:162 , LEU C:163 , ALA C:164 , GLU C:165 , LYS C:220 , ASN C:224 , ILE C:231 , PHE C:265 , LEU C:266 , LYS C:267 , SER C:269 , PHE C:272 , GLY C:273 , CYS C:276 , PHE C:277 , PHE C:338 , LYS C:339 , ARG C:442 , NAI C:500 , HOH C:3015 , HOH C:3018 , HOH C:3019 , HOH C:3028 , HOH C:3035 , HOH C:3050 , HOH C:3053 , HOH C:3076 , HOH C:3145 , ARG D:260
BINDING SITE FOR RESIDUE UPG C 501
19
CC1
SOFTWARE
ILE D:10 , GLY D:11 , GLY D:13 , TYR D:14 , VAL D:15 , ASP D:36 , VAL D:37 , ARG D:41 , SER D:88 , VAL D:89 , ASN D:90 , THR D:91 , TYR D:108 , SER D:130 , THR D:131 , GLU D:161 , LEU D:163 , GLU D:165 , CYS D:276 , LYS D:279 , ARG D:346 , UPG D:501 , HOH D:3013 , HOH D:3018 , HOH D:3028 , HOH D:3044 , HOH D:3103 , HOH D:3159 , HOH D:3181 , HOH D:3182
BINDING SITE FOR RESIDUE NAI D 500
20
CC2
SOFTWARE
ARG C:260 , GLU D:161 , PHE D:162 , LEU D:163 , ALA D:164 , GLU D:165 , LYS D:220 , ASN D:224 , ILE D:231 , PHE D:265 , LEU D:266 , LYS D:267 , SER D:269 , PHE D:272 , GLY D:273 , CYS D:276 , PHE D:277 , PHE D:338 , LYS D:339 , ARG D:442 , NAI D:500 , HOH D:3013 , HOH D:3019 , HOH D:3021 , HOH D:3026 , HOH D:3037 , HOH D:3038 , HOH D:3044 , HOH D:3052 , HOH D:3164
BINDING SITE FOR RESIDUE UPG D 501
21
CC3
SOFTWARE
ILE E:10 , GLY E:11 , GLY E:13 , TYR E:14 , VAL E:15 , ASP E:36 , VAL E:37 , ARG E:41 , SER E:88 , VAL E:89 , ASN E:90 , THR E:91 , TYR E:108 , SER E:130 , THR E:131 , GLU E:161 , LEU E:163 , GLU E:165 , CYS E:276 , LYS E:279 , ARG E:346 , UPG E:501 , HOH E:3025 , HOH E:3026 , HOH E:3035 , HOH E:3050 , HOH E:3051 , HOH E:3067 , HOH E:3193
BINDING SITE FOR RESIDUE NAI E 500
22
CC4
SOFTWARE
GLU E:161 , PHE E:162 , LEU E:163 , ALA E:164 , GLU E:165 , LYS E:220 , ASN E:224 , ILE E:231 , PHE E:265 , LEU E:266 , LYS E:267 , SER E:269 , PHE E:272 , GLY E:273 , CYS E:276 , PHE E:277 , PHE E:338 , LYS E:339 , ARG E:442 , NAI E:500 , HOH E:3017 , HOH E:3025 , HOH E:3027 , HOH E:3030 , HOH E:3037 , HOH E:3050 , HOH E:3086 , HOH E:3116 , HOH E:3129 , ARG F:260
BINDING SITE FOR RESIDUE UPG E 501
23
CC5
SOFTWARE
ILE F:10 , GLY F:11 , GLY F:13 , TYR F:14 , VAL F:15 , ASP F:36 , VAL F:37 , ARG F:41 , SER F:88 , VAL F:89 , ASN F:90 , THR F:91 , TYR F:108 , SER F:130 , THR F:131 , GLU F:161 , LEU F:163 , GLU F:165 , CYS F:276 , LYS F:279 , ARG F:346 , UPG F:501 , HOH F:3011 , HOH F:3019 , HOH F:3026 , HOH F:3036 , HOH F:3088 , HOH F:3163 , HOH F:3164
BINDING SITE FOR RESIDUE NAI F 500
24
CC6
SOFTWARE
ARG E:260 , GLU F:161 , PHE F:162 , LEU F:163 , ALA F:164 , GLU F:165 , LYS F:220 , ASN F:224 , ILE F:231 , PHE F:265 , LEU F:266 , LYS F:267 , SER F:269 , PHE F:272 , GLY F:273 , CYS F:276 , PHE F:277 , PHE F:338 , LYS F:339 , ARG F:442 , NAI F:500 , HOH F:3011 , HOH F:3017 , HOH F:3023 , HOH F:3026 , HOH F:3029 , HOH F:3041 , HOH F:3042 , HOH F:3053 , HOH F:3150
BINDING SITE FOR RESIDUE UPG F 501
25
CC7
SOFTWARE
ILE G:10 , GLY G:11 , GLY G:13 , TYR G:14 , VAL G:15 , ASP G:36 , VAL G:37 , ARG G:41 , SER G:88 , VAL G:89 , ASN G:90 , THR G:91 , TYR G:108 , SER G:130 , THR G:131 , GLU G:161 , LEU G:163 , GLU G:165 , CYS G:276 , LYS G:279 , ARG G:346 , UPG G:501 , HOH G:3007 , HOH G:3008 , HOH G:3022 , HOH G:3033 , HOH G:3059 , HOH G:3079 , HOH G:3088 , HOH G:3123 , HOH G:3130
BINDING SITE FOR RESIDUE NAI G 500
26
CC8
SOFTWARE
GLU G:161 , PHE G:162 , LEU G:163 , ALA G:164 , GLU G:165 , LYS G:220 , ASN G:224 , ILE G:231 , PHE G:265 , LEU G:266 , LYS G:267 , SER G:269 , PHE G:272 , GLY G:273 , CYS G:276 , PHE G:277 , PHE G:338 , LYS G:339 , ARG G:442 , NAI G:500 , HOH G:3007 , HOH G:3022 , HOH G:3040 , HOH G:3041 , HOH G:3063 , HOH G:3068 , HOH G:3074 , HOH G:3077 , ARG H:260
BINDING SITE FOR RESIDUE UPG G 501
27
CC9
SOFTWARE
ILE H:10 , GLY H:11 , GLY H:13 , TYR H:14 , VAL H:15 , ASP H:36 , VAL H:37 , ARG H:41 , SER H:88 , VAL H:89 , ASN H:90 , THR H:91 , TYR H:108 , SER H:130 , THR H:131 , GLU H:161 , LEU H:163 , GLU H:165 , CYS H:276 , LYS H:279 , ARG H:346 , UPG H:501 , HOH H:3014 , HOH H:3021 , HOH H:3041 , HOH H:3048 , HOH H:3095 , HOH H:3097 , HOH H:3098 , HOH H:3109
BINDING SITE FOR RESIDUE NAI H 500
28
DC1
SOFTWARE
ARG G:260 , GLU H:161 , PHE H:162 , LEU H:163 , ALA H:164 , GLU H:165 , LYS H:220 , ASN H:224 , ILE H:231 , PHE H:265 , LEU H:266 , LYS H:267 , SER H:269 , PHE H:272 , GLY H:273 , CYS H:276 , PHE H:277 , PHE H:338 , LYS H:339 , ARG H:442 , NAI H:500 , HOH H:3014 , HOH H:3017 , HOH H:3024 , HOH H:3034 , HOH H:3048 , HOH H:3053 , HOH H:3054 , HOH H:3068
BINDING SITE FOR RESIDUE UPG H 501
29
DC2
SOFTWARE
ILE I:10 , GLY I:11 , GLY I:13 , TYR I:14 , VAL I:15 , ASP I:36 , VAL I:37 , ARG I:41 , SER I:88 , VAL I:89 , ASN I:90 , THR I:91 , TYR I:108 , SER I:130 , THR I:131 , GLU I:161 , LEU I:163 , GLU I:165 , CYS I:276 , LYS I:279 , ARG I:346 , UPG I:501 , HOH I:3010 , HOH I:3029 , HOH I:3036 , HOH I:3039 , HOH I:3042 , HOH I:3182 , HOH I:3183
BINDING SITE FOR RESIDUE NAI I 500
30
DC3
SOFTWARE
GLU I:161 , PHE I:162 , LEU I:163 , ALA I:164 , GLU I:165 , LYS I:220 , ASN I:224 , ILE I:231 , PHE I:265 , LEU I:266 , LYS I:267 , SER I:269 , PHE I:272 , GLY I:273 , CYS I:276 , PHE I:277 , PHE I:338 , LYS I:339 , ARG I:442 , NAI I:500 , HOH I:3019 , HOH I:3026 , HOH I:3029 , HOH I:3036 , HOH I:3056 , HOH I:3078 , HOH I:3109 , HOH I:3120 , HOH I:3172 , ARG J:260
BINDING SITE FOR RESIDUE UPG I 501
31
DC4
SOFTWARE
ILE J:10 , GLY J:11 , GLY J:13 , TYR J:14 , VAL J:15 , ASP J:36 , VAL J:37 , ARG J:41 , SER J:88 , VAL J:89 , ASN J:90 , THR J:91 , TYR J:108 , ALA J:111 , SER J:130 , THR J:131 , GLU J:161 , LEU J:163 , GLU J:165 , CYS J:276 , LYS J:279 , ARG J:346 , UPG J:501 , HOH J:3021 , HOH J:3027 , HOH J:3046 , HOH J:3049 , HOH J:3051 , HOH J:3063 , HOH J:3173 , HOH J:3174
BINDING SITE FOR RESIDUE NAI J 500
32
DC5
SOFTWARE
ARG I:260 , GLU J:161 , PHE J:162 , LEU J:163 , ALA J:164 , GLU J:165 , LYS J:220 , ASN J:224 , ILE J:231 , PHE J:265 , LEU J:266 , LYS J:267 , SER J:269 , PHE J:272 , GLY J:273 , CYS J:276 , PHE J:277 , PHE J:338 , LYS J:339 , ARG J:442 , NAI J:500 , HOH J:3021 , HOH J:3022 , HOH J:3029 , HOH J:3045 , HOH J:3046 , HOH J:3050 , HOH J:3062 , HOH J:3085 , HOH J:3164
BINDING SITE FOR RESIDUE UPG J 501
33
DC6
SOFTWARE
ILE K:10 , GLY K:11 , GLY K:13 , TYR K:14 , VAL K:15 , ASP K:36 , VAL K:37 , ARG K:41 , SER K:88 , VAL K:89 , ASN K:90 , THR K:91 , TYR K:108 , SER K:130 , THR K:131 , GLU K:161 , LEU K:163 , GLU K:165 , CYS K:276 , LYS K:279 , ARG K:346 , UPG K:501 , HOH K:3029 , HOH K:3031 , HOH K:3039 , HOH K:3042 , HOH K:3048 , HOH K:3125 , HOH K:3126 , HOH K:3162
BINDING SITE FOR RESIDUE NAI K 500
34
DC7
SOFTWARE
GLU K:161 , PHE K:162 , LEU K:163 , ALA K:164 , GLU K:165 , LYS K:220 , ASN K:224 , ILE K:231 , PHE K:265 , LYS K:267 , SER K:269 , PHE K:272 , GLY K:273 , CYS K:276 , PHE K:277 , PHE K:338 , LYS K:339 , ARG K:442 , NAI K:500 , HOH K:3034 , HOH K:3042 , HOH K:3048 , HOH K:3050 , HOH K:3055 , HOH K:3057 , HOH K:3062 , HOH K:3083 , HOH K:3201 , ARG L:260
BINDING SITE FOR RESIDUE UPG K 501
35
DC8
SOFTWARE
ILE L:10 , GLY L:11 , GLY L:13 , TYR L:14 , VAL L:15 , ASP L:36 , VAL L:37 , ARG L:41 , SER L:88 , VAL L:89 , ASN L:90 , THR L:91 , TYR L:108 , ALA L:111 , SER L:130 , THR L:131 , GLU L:161 , LEU L:163 , GLU L:165 , CYS L:276 , LYS L:279 , ARG L:346 , UPG L:501 , HOH L:3015 , HOH L:3017 , HOH L:3032 , HOH L:3048 , HOH L:3105 , HOH L:3144
BINDING SITE FOR RESIDUE NAI L 500
36
DC9
SOFTWARE
ARG K:260 , GLU L:161 , PHE L:162 , LEU L:163 , ALA L:164 , GLU L:165 , LYS L:220 , ASN L:224 , ILE L:231 , PHE L:265 , LYS L:267 , SER L:269 , PHE L:272 , GLY L:273 , CYS L:276 , PHE L:277 , PHE L:338 , LYS L:339 , ARG L:442 , NAI L:500 , HOH L:3015 , HOH L:3025 , HOH L:3029 , HOH L:3032 , HOH L:3036 , HOH L:3041 , HOH L:3070 , HOH L:3108 , HOH L:3111
BINDING SITE FOR RESIDUE UPG L 501
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(11, 132)
Info
All Exons
Exon 1.5c (A:1-54 | B:1-54 | C:1-54 | D:2-54 ...)
Exon 1.6b (A:55-88 | B:55-88 | C:55-88 | D:55...)
Exon 1.7f (A:89-155 | B:89-155 | C:89-155 | D...)
Exon 1.8b (A:156-221 | B:156-221 | C:156-221 ...)
Exon 1.9 (A:222-271 | B:222-271 | C:222-271 ...)
Exon 1.10 (A:271-302 | B:271-302 | C:271-302 ...)
Exon 1.11 (A:303-346 | B:303-346 | C:303-346 ...)
Exon 1.12 (A:346-391 (gaps) | B:346-391 (gaps...)
Exon 1.13 (A:391-421 | B:391-421 | C:391-421 ...)
Exon 1.14 (A:422-458 | B:422-458 | C:422-458 ...)
Exon 1.15d (A:459-466 | B:459-466 | C:459-466 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2a/1.5c
02: Boundary 1.5c/1.6b
03: Boundary 1.6b/1.7f
04: Boundary 1.7f/1.8b
05: Boundary 1.8b/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14
11: Boundary 1.14/1.15d
12: Boundary 1.15d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000316423
2a
ENSE00001236134
chr4:
39529238-39528903
336
UGDH_HUMAN
-
0
0
-
-
1.5c
ENST00000316423
5c
ENSE00000826500
chr4:
39523139-39522971
169
UGDH_HUMAN
1-54
54
12
A:1-54
B:1-54
C:1-54
D:2-54
E:2-54
F:1-54
G:1-54
H:2-54
I:1-54
J:1-54
K:1-54
L:1-54
54
54
54
53
53
54
54
53
54
54
54
54
1.6b
ENST00000316423
6b
ENSE00000711764
chr4:
39515804-39515703
102
UGDH_HUMAN
55-88
34
12
A:55-88
B:55-88
C:55-88
D:55-88
E:55-88
F:55-88
G:55-88
H:55-88
I:55-88
J:55-88
K:55-88
L:55-88
34
34
34
34
34
34
34
34
34
34
34
34
1.7f
ENST00000316423
7f
ENSE00000711762
chr4:
39512481-39512281
201
UGDH_HUMAN
89-155
67
12
A:89-155
B:89-155
C:89-155
D:89-155
E:89-155
F:89-155
G:89-155
H:89-155
I:89-155
J:89-155
K:89-155
L:89-155
67
67
67
67
67
67
67
67
67
67
67
67
1.8b
ENST00000316423
8b
ENSE00000826499
chr4:
39512170-39511973
198
UGDH_HUMAN
156-221
66
12
A:156-221
B:156-221
C:156-221
D:156-221
E:156-221
F:156-221
G:156-221
H:156-221
I:156-221
J:156-221
K:156-221
L:156-221
66
66
66
66
66
66
66
66
66
66
66
66
1.9
ENST00000316423
9
ENSE00000826498
chr4:
39511527-39511380
148
UGDH_HUMAN
222-271
50
12
A:222-271
B:222-271
C:222-271
D:222-271
E:222-271
F:222-271
G:222-271
H:222-271
I:222-271
J:222-271
K:222-271
L:222-271
50
50
50
50
50
50
50
50
50
50
50
50
1.10
ENST00000316423
10
ENSE00000826497
chr4:
39510280-39510186
95
UGDH_HUMAN
271-302
32
12
A:271-302
B:271-302
C:271-302
D:271-302
E:271-302
F:271-302
G:271-302
H:271-302
I:271-302
J:271-302
K:271-302
L:271-302
32
32
32
32
32
32
32
32
32
32
32
32
1.11
ENST00000316423
11
ENSE00000826496
chr4:
39507368-39507238
131
UGDH_HUMAN
303-346
44
12
A:303-346
B:303-346
C:303-346
D:303-346
E:303-346
F:303-346
G:303-346
H:303-346
I:303-346
J:303-346
K:303-346
L:303-346
44
44
44
44
44
44
44
44
44
44
44
44
1.12
ENST00000316423
12
ENSE00000711745
chr4:
39506990-39506857
134
UGDH_HUMAN
346-391
46
12
A:346-391 (gaps)
B:346-391 (gaps)
C:346-391 (gaps)
D:346-391 (gaps)
E:346-391 (gaps)
F:346-391 (gaps)
G:346-391 (gaps)
H:346-391 (gaps)
I:346-391 (gaps)
J:346-391 (gaps)
K:346-391 (gaps)
L:346-391 (gaps)
46
46
46
46
46
46
46
46
46
46
46
46
1.13
ENST00000316423
13
ENSE00000711741
chr4:
39506128-39506037
92
UGDH_HUMAN
391-421
31
12
A:391-421
B:391-421
C:391-421
D:391-421
E:391-421
F:391-421
G:391-421
H:391-421
I:391-421
J:391-421
K:391-421
L:391-421
31
31
31
31
31
31
31
31
31
31
31
31
1.14
ENST00000316423
14
ENSE00000711736
chr4:
39505605-39505495
111
UGDH_HUMAN
422-458
37
12
A:422-458
B:422-458
C:422-458
D:422-458
E:422-458
F:422-458
G:422-458
H:422-458
I:422-458
J:422-458
K:422-458
L:422-458
37
37
37
37
37
37
37
37
37
37
37
37
1.15d
ENST00000316423
15d
ENSE00001420804
chr4:
39501873-39500375
1499
UGDH_HUMAN
459-494
36
12
A:459-466
B:459-466
C:459-466
D:459-466
E:459-466
F:459-466
G:459-466
H:459-466
I:459-466
J:459-466
K:459-466
L:459-466
8
8
8
8
8
8
8
8
8
8
8
8
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(2, 36)
Info
all CATH domains
1a: CATH_2q3eD01 (D:2-212)
1b: CATH_2q3eE01 (E:2-212)
1c: CATH_2q3eH01 (H:2-212)
1d: CATH_2q3eA01 (A:1-212)
1e: CATH_2q3eB01 (B:1-212)
1f: CATH_2q3eC01 (C:1-212)
1g: CATH_2q3eF01 (F:1-212)
1h: CATH_2q3eG01 (G:1-212)
1i: CATH_2q3eI01 (I:1-212)
1j: CATH_2q3eJ01 (J:1-212)
1k: CATH_2q3eK01 (K:1-212)
1l: CATH_2q3eL01 (L:1-212)
1m: CATH_2q3eD03 (D:245-466)
1n: CATH_2q3eA03 (A:245-466)
1o: CATH_2q3eB03 (B:245-466)
1p: CATH_2q3eC03 (C:245-466)
1q: CATH_2q3eE03 (E:245-466)
1r: CATH_2q3eF03 (F:245-466)
1s: CATH_2q3eG03 (G:245-466)
1t: CATH_2q3eH03 (H:245-466)
1u: CATH_2q3eI03 (I:245-466)
1v: CATH_2q3eJ03 (J:245-466)
1w: CATH_2q3eK03 (K:245-466)
1x: CATH_2q3eL03 (L:245-466)
2a: CATH_2q3eA02 (A:213-244)
2b: CATH_2q3eB02 (B:213-244)
2c: CATH_2q3eK02 (K:213-244)
2d: CATH_2q3eL02 (L:213-244)
2e: CATH_2q3eC02 (C:213-244)
2f: CATH_2q3eD02 (D:213-244)
2g: CATH_2q3eE02 (E:213-244)
2h: CATH_2q3eF02 (F:213-244)
2i: CATH_2q3eG02 (G:213-244)
2j: CATH_2q3eH02 (H:213-244)
2k: CATH_2q3eI02 (I:213-244)
2l: CATH_2q3eJ02 (J:213-244)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
2q3eD01
D:2-212
1b
2q3eE01
E:2-212
1c
2q3eH01
H:2-212
1d
2q3eA01
A:1-212
1e
2q3eB01
B:1-212
1f
2q3eC01
C:1-212
1g
2q3eF01
F:1-212
1h
2q3eG01
G:1-212
1i
2q3eI01
I:1-212
1j
2q3eJ01
J:1-212
1k
2q3eK01
K:1-212
1l
2q3eL01
L:1-212
1m
2q3eD03
D:245-466
1n
2q3eA03
A:245-466
1o
2q3eB03
B:245-466
1p
2q3eC03
C:245-466
1q
2q3eE03
E:245-466
1r
2q3eF03
F:245-466
1s
2q3eG03
G:245-466
1t
2q3eH03
H:245-466
1u
2q3eI03
I:245-466
1v
2q3eJ03
J:245-466
1w
2q3eK03
K:245-466
1x
2q3eL03
L:245-466
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Human (Homo sapiens)
(9)
2a
2q3eA02
A:213-244
2b
2q3eB02
B:213-244
2c
2q3eK02
K:213-244
2d
2q3eL02
L:213-244
2e
2q3eC02
C:213-244
2f
2q3eD02
D:213-244
2g
2q3eE02
E:213-244
2h
2q3eF02
F:213-244
2i
2q3eG02
G:213-244
2j
2q3eH02
H:213-244
2k
2q3eI02
I:213-244
2l
2q3eJ02
J:213-244
[
close CATH info
]
Pfam Domains
(3, 36)
Info
all PFAM domains
1a: PFAM_UDPG_MGDP_dh_2q3eL01 (L:213-310)
1b: PFAM_UDPG_MGDP_dh_2q3eL02 (L:213-310)
1c: PFAM_UDPG_MGDP_dh_2q3eL03 (L:213-310)
1d: PFAM_UDPG_MGDP_dh_2q3eL04 (L:213-310)
1e: PFAM_UDPG_MGDP_dh_2q3eL05 (L:213-310)
1f: PFAM_UDPG_MGDP_dh_2q3eL06 (L:213-310)
1g: PFAM_UDPG_MGDP_dh_2q3eL07 (L:213-310)
1h: PFAM_UDPG_MGDP_dh_2q3eL08 (L:213-310)
1i: PFAM_UDPG_MGDP_dh_2q3eL09 (L:213-310)
1j: PFAM_UDPG_MGDP_dh_2q3eL10 (L:213-310)
1k: PFAM_UDPG_MGDP_dh_2q3eL11 (L:213-310)
1l: PFAM_UDPG_MGDP_dh_2q3eL12 (L:213-310)
2a: PFAM_UDPG_MGDP_dh_N_2q3eL13 (L:5-195)
2b: PFAM_UDPG_MGDP_dh_N_2q3eL14 (L:5-195)
2c: PFAM_UDPG_MGDP_dh_N_2q3eL15 (L:5-195)
2d: PFAM_UDPG_MGDP_dh_N_2q3eL16 (L:5-195)
2e: PFAM_UDPG_MGDP_dh_N_2q3eL17 (L:5-195)
2f: PFAM_UDPG_MGDP_dh_N_2q3eL18 (L:5-195)
2g: PFAM_UDPG_MGDP_dh_N_2q3eL19 (L:5-195)
2h: PFAM_UDPG_MGDP_dh_N_2q3eL20 (L:5-195)
2i: PFAM_UDPG_MGDP_dh_N_2q3eL21 (L:5-195)
2j: PFAM_UDPG_MGDP_dh_N_2q3eL22 (L:5-195)
2k: PFAM_UDPG_MGDP_dh_N_2q3eL23 (L:5-195)
2l: PFAM_UDPG_MGDP_dh_N_2q3eL24 (L:5-195)
3a: PFAM_UDPG_MGDP_dh_C_2q3eL25 (L:332-447)
3b: PFAM_UDPG_MGDP_dh_C_2q3eL26 (L:332-447)
3c: PFAM_UDPG_MGDP_dh_C_2q3eL27 (L:332-447)
3d: PFAM_UDPG_MGDP_dh_C_2q3eL28 (L:332-447)
3e: PFAM_UDPG_MGDP_dh_C_2q3eL29 (L:332-447)
3f: PFAM_UDPG_MGDP_dh_C_2q3eL30 (L:332-447)
3g: PFAM_UDPG_MGDP_dh_C_2q3eL31 (L:332-447)
3h: PFAM_UDPG_MGDP_dh_C_2q3eL32 (L:332-447)
3i: PFAM_UDPG_MGDP_dh_C_2q3eL33 (L:332-447)
3j: PFAM_UDPG_MGDP_dh_C_2q3eL34 (L:332-447)
3k: PFAM_UDPG_MGDP_dh_C_2q3eL35 (L:332-447)
3l: PFAM_UDPG_MGDP_dh_C_2q3eL36 (L:332-447)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6PGD_C
(47)
Family
:
UDPG_MGDP_dh
(10)
Homo sapiens (Human)
(5)
1a
UDPG_MGDP_dh-2q3eL01
L:213-310
1b
UDPG_MGDP_dh-2q3eL02
L:213-310
1c
UDPG_MGDP_dh-2q3eL03
L:213-310
1d
UDPG_MGDP_dh-2q3eL04
L:213-310
1e
UDPG_MGDP_dh-2q3eL05
L:213-310
1f
UDPG_MGDP_dh-2q3eL06
L:213-310
1g
UDPG_MGDP_dh-2q3eL07
L:213-310
1h
UDPG_MGDP_dh-2q3eL08
L:213-310
1i
UDPG_MGDP_dh-2q3eL09
L:213-310
1j
UDPG_MGDP_dh-2q3eL10
L:213-310
1k
UDPG_MGDP_dh-2q3eL11
L:213-310
1l
UDPG_MGDP_dh-2q3eL12
L:213-310
Clan
:
NADP_Rossmann
(1239)
Family
:
UDPG_MGDP_dh_N
(10)
Homo sapiens (Human)
(5)
2a
UDPG_MGDP_dh_N-2q3eL13
L:5-195
2b
UDPG_MGDP_dh_N-2q3eL14
L:5-195
2c
UDPG_MGDP_dh_N-2q3eL15
L:5-195
2d
UDPG_MGDP_dh_N-2q3eL16
L:5-195
2e
UDPG_MGDP_dh_N-2q3eL17
L:5-195
2f
UDPG_MGDP_dh_N-2q3eL18
L:5-195
2g
UDPG_MGDP_dh_N-2q3eL19
L:5-195
2h
UDPG_MGDP_dh_N-2q3eL20
L:5-195
2i
UDPG_MGDP_dh_N-2q3eL21
L:5-195
2j
UDPG_MGDP_dh_N-2q3eL22
L:5-195
2k
UDPG_MGDP_dh_N-2q3eL23
L:5-195
2l
UDPG_MGDP_dh_N-2q3eL24
L:5-195
Clan
:
no clan defined [family: UDPG_MGDP_dh_C]
(10)
Family
:
UDPG_MGDP_dh_C
(10)
Homo sapiens (Human)
(5)
3a
UDPG_MGDP_dh_C-2q3eL25
L:332-447
3b
UDPG_MGDP_dh_C-2q3eL26
L:332-447
3c
UDPG_MGDP_dh_C-2q3eL27
L:332-447
3d
UDPG_MGDP_dh_C-2q3eL28
L:332-447
3e
UDPG_MGDP_dh_C-2q3eL29
L:332-447
3f
UDPG_MGDP_dh_C-2q3eL30
L:332-447
3g
UDPG_MGDP_dh_C-2q3eL31
L:332-447
3h
UDPG_MGDP_dh_C-2q3eL32
L:332-447
3i
UDPG_MGDP_dh_C-2q3eL33
L:332-447
3j
UDPG_MGDP_dh_C-2q3eL34
L:332-447
3k
UDPG_MGDP_dh_C-2q3eL35
L:332-447
3l
UDPG_MGDP_dh_C-2q3eL36
L:332-447
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