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2Q2F
Asym. Unit
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Asym.Unit (37 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN SELENOPROTEIN S (VCP-INTERACTING MEMBRANE PROTEIN)
Authors
:
J. R. Walker, R. Paramanathan, C. Butler-Cole, J. Weigelt, M. Sundstro C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Struct Genomics Consortium (Sgc)
Date
:
28 May 07 (Deposition) - 05 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Anti-Parallel Coiled-Coil, Endoplasmic Reticulum, Membrane, Selenium, Selenocysteine, Transmembrane, Structural Genomics, Structural Genomics Consortium, Sgc, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, R. Paramanathan, C. Butler-Cole, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Human Selenoprotein S (Vcp-Interacting Membrane Protein).
To Be Published
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLYCEROL (GOLa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
View:
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No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
MSE
3
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:99
BINDING SITE FOR RESIDUE CL A 1
2
AC2
SOFTWARE
ARG A:59 , HOH A:135
BINDING SITE FOR RESIDUE CL A 2
3
AC3
SOFTWARE
ARG A:65 , PRO A:72 , GLU A:80 , ALA A:81 , ALA A:84 , HOH A:128 , HOH A:142 , HOH A:158 , HOH A:162
BINDING SITE FOR RESIDUE GOL A 3
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(3, 3)
Info
All Exons
Exon 1.1j (A:51-71 (gaps))
Exon 1.2a (A:71-106)
Exon 1.2d (A:107-122)
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All Exon Boundaries
1: Boundary 1.1d/1.1j
2: Boundary 1.1j/1.2a
3: Boundary 1.2a/1.2d
4: Boundary 1.2d/1.2f
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000398226
1d
ENSE00002186657
chr15:
101817655-101817547
109
SELS_HUMAN
1-26
26
0
-
-
1.1j
ENST00000398226
1j
ENSE00000703039
chr15:
101816880-101816746
135
SELS_HUMAN
26-71
46
1
A:51-71 (gaps)
45
1.2a
ENST00000398226
2a
ENSE00002199543
chr15:
101815566-101815460
107
SELS_HUMAN
71-106
36
1
A:71-106
36
1.2d
ENST00000398226
2d
ENSE00000703045
chr15:
101814886-101814797
90
SELS_HUMAN
107-136
30
1
A:107-122
16
1.2f
ENST00000398226
2f
ENSE00000703049
chr15:
101814700-101814625
76
SELS_HUMAN
137-162
26
0
-
-
1.3b
ENST00000398226
3b
ENSE00001532206
chr15:
101813061-101812969
93
SELS_HUMAN
162-189
28
0
-
-
1.4b
ENST00000398226
4b
ENSE00002072396
chr15:
101811850-101811022
829
SELS_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Selenoprotein_S_2q2fA01 (A:52-122)
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Clans
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(
)
Clan
:
no clan defined [family: Selenoprotein_S]
(1)
Family
:
Selenoprotein_S
(1)
Homo sapiens (Human)
(1)
1a
Selenoprotein_S-2q2fA01
A:52-122
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Chain A
Asymmetric Unit 1
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