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2Q14
Biol. Unit 2
Info
Asym.Unit (579 KB)
Biol.Unit 1 (286 KB)
Biol.Unit 2 (283 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHOHYDROLASE (BT4208) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.20 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
23 May 07 (Deposition) - 12 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Bt4208, Hd Domain, Phosphohydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Phosphohydrolase (Bt4208) From Bacteroides Thetaiotaomicron Vpi-5482 At 2. 20 A Resolution
To Be Published
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Hetero Components
(4, 56)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5ak: SELENOMETHIONINE (MSEak)
5al: SELENOMETHIONINE (MSEal)
5am: SELENOMETHIONINE (MSEam)
5an: SELENOMETHIONINE (MSEan)
5ao: SELENOMETHIONINE (MSEao)
5ap: SELENOMETHIONINE (MSEap)
5aq: SELENOMETHIONINE (MSEaq)
5ar: SELENOMETHIONINE (MSEar)
5as: SELENOMETHIONINE (MSEas)
5at: SELENOMETHIONINE (MSEat)
5au: SELENOMETHIONINE (MSEau)
5av: SELENOMETHIONINE (MSEav)
5aw: SELENOMETHIONINE (MSEaw)
5ax: SELENOMETHIONINE (MSEax)
5ay: SELENOMETHIONINE (MSEay)
5az: SELENOMETHIONINE (MSEaz)
5b: SELENOMETHIONINE (MSEb)
5ba: SELENOMETHIONINE (MSEba)
5bb: SELENOMETHIONINE (MSEbb)
5bc: SELENOMETHIONINE (MSEbc)
5bd: SELENOMETHIONINE (MSEbd)
5be: SELENOMETHIONINE (MSEbe)
5bf: SELENOMETHIONINE (MSEbf)
5bg: SELENOMETHIONINE (MSEbg)
5bh: SELENOMETHIONINE (MSEbh)
5bi: SELENOMETHIONINE (MSEbi)
5bj: SELENOMETHIONINE (MSEbj)
5bk: SELENOMETHIONINE (MSEbk)
5bl: SELENOMETHIONINE (MSEbl)
5bm: SELENOMETHIONINE (MSEbm)
5bn: SELENOMETHIONINE (MSEbn)
5bo: SELENOMETHIONINE (MSEbo)
5bp: SELENOMETHIONINE (MSEbp)
5bq: SELENOMETHIONINE (MSEbq)
5br: SELENOMETHIONINE (MSEbr)
5bs: SELENOMETHIONINE (MSEbs)
5bt: SELENOMETHIONINE (MSEbt)
5bu: SELENOMETHIONINE (MSEbu)
5bv: SELENOMETHIONINE (MSEbv)
5bw: SELENOMETHIONINE (MSEbw)
5bx: SELENOMETHIONINE (MSEbx)
5by: SELENOMETHIONINE (MSEby)
5bz: SELENOMETHIONINE (MSEbz)
5c: SELENOMETHIONINE (MSEc)
5ca: SELENOMETHIONINE (MSEca)
5cb: SELENOMETHIONINE (MSEcb)
5cc: SELENOMETHIONINE (MSEcc)
5cd: SELENOMETHIONINE (MSEcd)
5ce: SELENOMETHIONINE (MSEce)
5cf: SELENOMETHIONINE (MSEcf)
5cg: SELENOMETHIONINE (MSEcg)
5ch: SELENOMETHIONINE (MSEch)
5ci: SELENOMETHIONINE (MSEci)
5cj: SELENOMETHIONINE (MSEcj)
5ck: SELENOMETHIONINE (MSEck)
5cl: SELENOMETHIONINE (MSEcl)
5cm: SELENOMETHIONINE (MSEcm)
5cn: SELENOMETHIONINE (MSEcn)
5co: SELENOMETHIONINE (MSEco)
5cp: SELENOMETHIONINE (MSEcp)
5cq: SELENOMETHIONINE (MSEcq)
5cr: SELENOMETHIONINE (MSEcr)
5cs: SELENOMETHIONINE (MSEcs)
5ct: SELENOMETHIONINE (MSEct)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
1
Ligand/Ion
GLYCEROL
5
MSE
48
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
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Sites
(8, 8)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC3 (SOFTWARE)
6: BC4 (SOFTWARE)
7: BC6 (SOFTWARE)
8: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
VAL E:46 , VAL E:47 , THR E:226 , ARG E:313 , HOH E:624 , HOH E:701 , LYS F:6 , ILE F:7 , TYR F:24 , GLN F:33 , PHE F:56 , LYS H:202
BINDING SITE FOR RESIDUE ADP E 501
2
AC8
SOFTWARE
ILE E:7 , TYR E:24 , ARG E:28 , GLN E:33 , VAL F:46 , VAL F:47 , LYS F:225 , THR F:226 , ARG F:313 , HOH F:657 , HOH F:726 , HOH F:736
BINDING SITE FOR RESIDUE ADP F 501
3
AC9
SOFTWARE
VAL G:46 , THR G:226 , ARG G:313 , HOH G:652 , HOH G:653 , HOH G:671 , ILE H:7 , GLN H:33 , PHE H:56
BINDING SITE FOR RESIDUE ADP G 501
4
BC1
SOFTWARE
LYS E:202 , ILE G:7 , ILE G:8 , TYR G:24 , VAL G:27 , GLN G:33 , VAL H:46 , VAL H:47 , THR H:226 , ARG H:313 , HOH H:557 , HOH H:604
BINDING SITE FOR RESIDUE ADP H 501
5
BC3
SOFTWARE
GLN G:40 , VAL G:41 , ASP G:170
BINDING SITE FOR RESIDUE EDO G 502
6
BC4
SOFTWARE
GLN E:40 , VAL E:41 , ASP E:170 , TYR E:222
BINDING SITE FOR RESIDUE EDO E 502
7
BC6
SOFTWARE
ARG G:196 , LEU G:197 , SER G:368 , ILE G:369 , ASP G:370
BINDING SITE FOR RESIDUE EDO G 503
8
BC8
SOFTWARE
GLN H:40 , TYR H:166 , ASP H:170 , TYR H:222
BINDING SITE FOR RESIDUE GOL H 502
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2q14B01 (B:5-99,B:115-220,B:363-394)
1b: CATH_2q14F01 (F:5-99,F:115-220,F:363-394)
1c: CATH_2q14H01 (H:5-99,H:115-220,H:363-394)
1d: CATH_2q14A01 (A:4-99,A:115-220,A:360-394)
1e: CATH_2q14D01 (D:2-99,D:115-220,D:363-394)
1f: CATH_2q14E01 (E:4-99,E:115-220,E:360-394)
1g: CATH_2q14G01 (G:4-99,G:115-220,G:360-394)
1h: CATH_2q14C01 (C:2-99,C:115-220,C:360-394)
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Hypothetical protein af1432
(13)
Homologous Superfamily
:
Hypothetical protein af1432
(13)
Bacteroides thetaiotaomicron vpi-5482. Organism_taxid: 226186. Strain:e50, dsm 2079, nctc 10582, vpi-5482.
(1)
1a
2q14B01
B:5-99,B:115-220,B:363-394
1b
2q14F01
F:5-99,F:115-220,F:363-394
1c
2q14H01
H:5-99,H:115-220,H:363-394
1d
2q14A01
A:4-99,A:115-220,A:360-394
1e
2q14D01
D:2-99,D:115-220,D:363-394
1f
2q14E01
E:4-99,E:115-220,E:360-394
1g
2q14G01
G:4-99,G:115-220,G:360-394
1h
2q14C01
C:2-99,C:115-220,C:360-394
[
close CATH info
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_HD_2q14H01 (H:55-169)
1b: PFAM_HD_2q14H02 (H:55-169)
1c: PFAM_HD_2q14H03 (H:55-169)
1d: PFAM_HD_2q14H04 (H:55-169)
1e: PFAM_HD_2q14H05 (H:55-169)
1f: PFAM_HD_2q14H06 (H:55-169)
1g: PFAM_HD_2q14H07 (H:55-169)
1h: PFAM_HD_2q14H08 (H:55-169)
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(
)
Clan
:
HD_PDEase
(93)
Family
:
HD
(9)
Bacteroides thetaiotaomicron
(1)
1a
HD-2q14H01
H:55-169
1b
HD-2q14H02
H:55-169
1c
HD-2q14H03
H:55-169
1d
HD-2q14H04
H:55-169
1e
HD-2q14H05
H:55-169
1f
HD-2q14H06
H:55-169
1g
HD-2q14H07
H:55-169
1h
HD-2q14H08
H:55-169
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