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Getting 'Exon' information from database.
2Q12
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BAR DOMAIN OF APPL1
Authors
:
X. C. Zhang, G. Zhu
Date
:
23 May 07 (Deposition) - 14 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Appl1, Bar Domain, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Zhu, J. Chen, J. Liu, J. S. Brunzelle, B. Huang, N. Wakeham, S. Terzyan, X. Li, Z. Rao, G. Li, X. C. Zhang
Structure Of The Appl1 Bar-Ph Domain And Characterization O Its Interaction With Rab5.
Embo J. V. 26 3484 2007
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
11
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050958 (A108V, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050958
A
108
V
DP13A_HUMAN
Polymorphism
4381906
A
A
108
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(10, 10)
Info
All Exons
Exon 1.1a (A:13-18)
Exon 1.3 (A:19-51)
Exon 1.4 (A:52-71)
Exon 1.5a (A:72-95 (gaps))
Exon 1.6 (A:96-125)
Exon 1.7 (A:125-139)
Exon 1.8b (A:139-158)
Exon 1.9 (A:159-207)
Exon 1.10 (A:208-235)
Exon 1.11 (A:235-259)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5a
05: Boundary 1.5a/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8b
08: Boundary 1.8b/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000288266
1a
ENSE00001277615
chr3:
57261765-57261965
201
DP13A_HUMAN
1-18
18
1
A:13-18
6
1.3
ENST00000288266
3
ENSE00001032931
chr3:
57269594-57269692
99
DP13A_HUMAN
19-51
33
1
A:19-51
33
1.4
ENST00000288266
4
ENSE00001032953
chr3:
57271520-57271579
60
DP13A_HUMAN
52-71
20
1
A:52-71
20
1.5a
ENST00000288266
5a
ENSE00001277569
chr3:
57272073-57272144
72
DP13A_HUMAN
72-95
24
1
A:72-95 (gaps)
24
1.6
ENST00000288266
6
ENSE00001277563
chr3:
57274493-57274580
88
DP13A_HUMAN
96-125
30
1
A:96-125
30
1.7
ENST00000288266
7
ENSE00002171063
chr3:
57276129-57276170
42
DP13A_HUMAN
125-139
15
1
A:125-139
15
1.8b
ENST00000288266
8b
ENSE00001032951
chr3:
57276884-57276942
59
DP13A_HUMAN
139-158
20
1
A:139-158
20
1.9
ENST00000288266
9
ENSE00001032966
chr3:
57280104-57280250
147
DP13A_HUMAN
159-207
49
1
A:159-207
49
1.10
ENST00000288266
10
ENSE00001032930
chr3:
57281423-57281505
83
DP13A_HUMAN
208-235
28
1
A:208-235
28
1.11
ENST00000288266
11
ENSE00001032938
chr3:
57282221-57282379
159
DP13A_HUMAN
235-288
54
1
A:235-259
25
1.12
ENST00000288266
12
ENSE00001032944
chr3:
57283388-57283576
189
DP13A_HUMAN
288-351
64
0
-
-
1.13
ENST00000288266
13
ENSE00001032948
chr3:
57286297-57286339
43
DP13A_HUMAN
351-365
15
0
-
-
1.14
ENST00000288266
14
ENSE00001632937
chr3:
57287710-57287766
57
DP13A_HUMAN
366-384
19
0
-
-
1.15
ENST00000288266
15
ENSE00001032937
chr3:
57290985-57291079
95
DP13A_HUMAN
385-416
32
0
-
-
1.16
ENST00000288266
16
ENSE00001032934
chr3:
57291274-57291456
183
DP13A_HUMAN
416-477
62
0
-
-
1.17b
ENST00000288266
17b
ENSE00001032928
chr3:
57293056-57293108
53
DP13A_HUMAN
477-495
19
0
-
-
1.18b
ENST00000288266
18b
ENSE00001032967
chr3:
57293873-57294047
175
DP13A_HUMAN
495-553
59
0
-
-
1.19a
ENST00000288266
19a
ENSE00001032959
chr3:
57294145-57294181
37
DP13A_HUMAN
553-565
13
0
-
-
1.20
ENST00000288266
20
ENSE00001032964
chr3:
57294656-57294802
147
DP13A_HUMAN
566-614
49
0
-
-
1.21a
ENST00000288266
21a
ENSE00001032935
chr3:
57301770-57301820
51
DP13A_HUMAN
615-631
17
0
-
-
1.22
ENST00000288266
22
ENSE00001032946
chr3:
57302426-57302515
90
DP13A_HUMAN
632-661
30
0
-
-
1.23
ENST00000288266
23
ENSE00001121992
chr3:
57303569-57307496
3928
DP13A_HUMAN
662-709
48
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (49 KB)
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