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2Q0Z
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF Q9P172/SEC63 FROM HOMO SAPIENS. NORTHEAST STRUCTURAL GENOMICS TARGET HR1979.
Authors
:
J. Benach, H. Neely, M. Abashidze, W. C. Edstrom, J. Seetharaman, L. Zhao, Y. Fang, K. Cunningham, L. Owens, L-C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date
:
23 May 07 (Deposition) - 05 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Sec63, Sec, Nesg, Hr1979, Structural Genomics, Translocase, Northeast Structural Genomics Consortium, Psi-2, Protein Structure Initiative, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Benach, H. Neely, M. Abashidze, W. C. Edstrom, J. Seetharaman, L. Zhao, Y. Fang, K. Cunningham, L. Owens, L-C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of Q9P172/Sec63 From Homo Sapiens.
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071695 (A188T, chain X, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071695
A
1995
T
U520_HUMAN
Polymorphism
---
X
A
188
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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]
Exons
(7, 7)
Info
All Exons
Exon 1.36b (X:33-63)
Exon 1.37a (X:64-111)
Exon 1.37c (X:112-170)
Exon 1.38 (X:171-224)
Exon 1.39 (X:224-251)
Exon 1.41a (X:252-282)
Exon 1.42d (X:283-322)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.35b/1.36b
2: Boundary 1.36b/1.37a
3: Boundary 1.37a/1.37c
4: Boundary 1.37c/1.38
5: Boundary 1.38/1.39
6: Boundary 1.39/1.41a
7: Boundary 1.41a/1.42d
8: Boundary 1.42d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000323853
1b
ENSE00001859556
chr2:
96971253-96971131
123
U520_HUMAN
1-15
15
0
-
-
1.2
ENST00000323853
2
ENSE00001284634
chr2:
96970606-96970443
164
U520_HUMAN
16-70
55
0
-
-
1.3
ENST00000323853
3
ENSE00001284629
chr2:
96969068-96968897
172
U520_HUMAN
70-127
58
0
-
-
1.4
ENST00000323853
4
ENSE00001071827
chr2:
96967454-96967262
193
U520_HUMAN
128-192
65
0
-
-
1.5
ENST00000323853
5
ENSE00001071823
chr2:
96966791-96966736
56
U520_HUMAN
192-210
19
0
-
-
1.6
ENST00000323853
6
ENSE00001071817
chr2:
96965165-96965067
99
U520_HUMAN
211-243
33
0
-
-
1.7
ENST00000323853
7
ENSE00000963239
chr2:
96964705-96964553
153
U520_HUMAN
244-294
51
0
-
-
1.8
ENST00000323853
8
ENSE00000963240
chr2:
96964440-96964341
100
U520_HUMAN
295-328
34
0
-
-
1.9
ENST00000323853
9
ENSE00001322562
chr2:
96964158-96964022
137
U520_HUMAN
328-373
46
0
-
-
1.10
ENST00000323853
10
ENSE00000963279
chr2:
96963458-96963375
84
U520_HUMAN
374-401
28
0
-
-
1.11
ENST00000323853
11
ENSE00000963280
chr2:
96963274-96963101
174
U520_HUMAN
402-459
58
0
-
-
1.12
ENST00000323853
12
ENSE00000963281
chr2:
96962808-96962671
138
U520_HUMAN
460-505
46
0
-
-
1.13
ENST00000323853
13
ENSE00000963282
chr2:
96962429-96962274
156
U520_HUMAN
506-557
52
0
-
-
1.14
ENST00000323853
14
ENSE00000963283
chr2:
96961396-96961226
171
U520_HUMAN
558-614
57
0
-
-
1.15
ENST00000323853
15
ENSE00000963284
chr2:
96959247-96959054
194
U520_HUMAN
615-679
65
0
-
-
1.16
ENST00000323853
16
ENSE00000963285
chr2:
96958833-96958710
124
U520_HUMAN
679-720
42
0
-
-
1.17
ENST00000323853
17
ENSE00000963286
chr2:
96957638-96957489
150
U520_HUMAN
721-770
50
0
-
-
1.18
ENST00000323853
18
ENSE00000963287
chr2:
96957240-96957130
111
U520_HUMAN
771-807
37
0
-
-
1.19
ENST00000323853
19
ENSE00000963288
chr2:
96956553-96956422
132
U520_HUMAN
808-851
44
0
-
-
1.20
ENST00000323853
20
ENSE00000963289
chr2:
96956252-96956064
189
U520_HUMAN
852-914
63
0
-
-
1.21a
ENST00000323853
21a
ENSE00000963290
chr2:
96955734-96955537
198
U520_HUMAN
915-980
66
0
-
-
1.22
ENST00000323853
22
ENSE00000963291
chr2:
96955117-96954965
153
U520_HUMAN
981-1031
51
0
-
-
1.23
ENST00000323853
23
ENSE00000963292
chr2:
96954855-96954775
81
U520_HUMAN
1032-1058
27
0
-
-
1.24
ENST00000323853
24
ENSE00000963293
chr2:
96954484-96954401
84
U520_HUMAN
1059-1086
28
0
-
-
1.25
ENST00000323853
25
ENSE00000963294
chr2:
96953707-96953601
107
U520_HUMAN
1087-1122
36
0
-
-
1.26
ENST00000323853
26
ENSE00000963295
chr2:
96953295-96953177
119
U520_HUMAN
1122-1162
41
0
-
-
1.27
ENST00000323853
27
ENSE00000963296
chr2:
96952898-96952744
155
U520_HUMAN
1162-1213
52
0
-
-
1.28
ENST00000323853
28
ENSE00000963297
chr2:
96952615-96952426
190
U520_HUMAN
1214-1277
64
0
-
-
1.29
ENST00000323853
29
ENSE00000963298
chr2:
96952222-96952049
174
U520_HUMAN
1277-1335
59
0
-
-
1.30b
ENST00000323853
30b
ENSE00000963299
chr2:
96951078-96950918
161
U520_HUMAN
1335-1388
54
0
-
-
1.30f
ENST00000323853
30f
ENSE00000963300
chr2:
96950323-96950096
228
U520_HUMAN
1389-1464
76
0
-
-
1.30h
ENST00000323853
30h
ENSE00001789081
chr2:
96949742-96949551
192
U520_HUMAN
1465-1528
64
0
-
-
1.31
ENST00000323853
31
ENSE00001284845
chr2:
96949451-96949273
179
U520_HUMAN
1529-1588
60
0
-
-
1.32a
ENST00000323853
32a
ENSE00001284832
chr2:
96949090-96948939
152
U520_HUMAN
1588-1639
52
0
-
-
1.32e
ENST00000323853
32e
ENSE00000963304
chr2:
96947660-96947552
109
U520_HUMAN
1639-1675
37
0
-
-
1.33b
ENST00000323853
33b
ENSE00000963305
chr2:
96945297-96945189
109
U520_HUMAN
1675-1711
37
0
-
-
1.34
ENST00000323853
34
ENSE00000963306
chr2:
96944736-96944547
190
U520_HUMAN
1712-1775
64
0
-
-
1.35b
ENST00000323853
35b
ENSE00001284811
chr2:
96944449-96944285
165
U520_HUMAN
1775-1830
56
0
-
-
1.36b
ENST00000323853
36b
ENSE00000963308
chr2:
96944096-96943975
122
U520_HUMAN
1830-1870
41
1
X:33-63
31
1.37a
ENST00000323853
37a
ENSE00001284802
chr2:
96943688-96943545
144
U520_HUMAN
1871-1918
48
1
X:64-111
48
1.37c
ENST00000323853
37c
ENSE00001284798
chr2:
96943453-96943277
177
U520_HUMAN
1919-1977
59
1
X:112-170
59
1.38
ENST00000323853
38
ENSE00000963311
chr2:
96942979-96942819
161
U520_HUMAN
1978-2031
54
1
X:171-224
54
1.39
ENST00000323853
39
ENSE00000963312
chr2:
96942723-96942642
82
U520_HUMAN
2031-2058
28
1
X:224-251
28
1.41a
ENST00000323853
41a
ENSE00001775107
chr2:
96941087-96940995
93
U520_HUMAN
2059-2089
31
1
X:252-282
31
1.42d
ENST00000323853
42d
ENSE00001901401
chr2:
96940893-96940074
820
U520_HUMAN
2090-2136
47
1
X:283-322
40
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2q0zx1 (X:33-208)
2a: SCOP_d2q0zx2 (X:209-322)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Sec63 N-terminal domain-like
(3)
Superfamily
:
Sec63 N-terminal domain-like
(3)
Family
:
Sec63 N-terminal domain
(1)
Protein domain
:
Protein pro2281
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2q0zx1
X:33-208
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Sec63 C-terminal domain-like
(1)
Protein domain
:
Protein pro2281
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2q0zx2
X:209-322
[
close SCOP info
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2q0zX02 (X:150-207)
2a: CATH_2q0zX01 (X:33-149)
3a: CATH_2q0zX03 (X:208-322)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
Human (Homo sapiens)
(34)
1a
2q0zX02
X:150-207
Topology
:
Sec63 N-terminal domain-like fold
(1)
Homologous Superfamily
:
Sec63 N-terminal domain-like domain
(1)
Human (Homo sapiens)
(1)
2a
2q0zX01
X:33-149
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Human (Homo sapiens)
(41)
3a
2q0zX03
X:208-322
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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