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2Q08
Biol. Unit 2
Info
Asym.Unit (843 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (217 KB)
Biol.Unit 3 (217 KB)
Biol.Unit 4 (216 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PROTEIN BH0493 FROM BACILLUS HALODURANS C-125 COMPLEXED WITH ZN
Authors
:
A. A. Fedorov, E. V. Fedorov, Y. Patskovsky, J. M. Sauder, S. K. Burley, F. Raushel, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
21 May 07 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Structural Genomics, Nysgxrc, Target 9247A, Glucoronate Isomerase, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, Y. Patskovsky, J. M. Sauder, S. K. Burley, F. M. Raushel, S. C. Almo
Crystal Structure Of Glucoronate Isomerase From Bacillus Halodurans.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
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Sites
(4, 4)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
HIS D:26 , HIS D:28 , ASP D:355 , HOH D:1071
BINDING SITE FOR RESIDUE ZN D 984
2
AC5
SOFTWARE
HIS E:26 , HIS E:28 , ASP E:355 , HOH E:1058
BINDING SITE FOR RESIDUE ZN E 985
3
AC6
SOFTWARE
HIS F:26 , HIS F:28 , ASP F:355 , HOH F:1068
BINDING SITE FOR RESIDUE ZN F 986
4
BC5
SOFTWARE
HOH D:1000 , HOH D:1014 , GLU E:332 , HOH E:998 , HOH E:1029 , HOH F:1024 , HOH F:1036
BINDING SITE FOR RESIDUE ZN D 994
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2q08a_ (A:)
1b: SCOP_d2q08b_ (B:)
1c: SCOP_d2q08c_ (C:)
1d: SCOP_d2q08d_ (D:)
1e: SCOP_d2q08e_ (E:)
1f: SCOP_d2q08f_ (F:)
1g: SCOP_d2q08g_ (G:)
1h: SCOP_d2q08h_ (H:)
1i: SCOP_d2q08i_ (I:)
1j: SCOP_d2q08j_ (J:)
1k: SCOP_d2q08k_ (K:)
1l: SCOP_d2q08l_ (L:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
Uronate isomerase-like
(10)
Protein domain
:
Uncharacterized protein BH0493
(9)
Bacillus halodurans [TaxId: 86665]
(9)
1a
d2q08a_
A:
1b
d2q08b_
B:
1c
d2q08c_
C:
1d
d2q08d_
D:
1e
d2q08e_
E:
1f
d2q08f_
F:
1g
d2q08g_
G:
1h
d2q08h_
H:
1i
d2q08i_
I:
1j
d2q08j_
J:
1k
d2q08k_
K:
1l
d2q08l_
L:
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2q08A02 (A:39-120)
1b: CATH_2q08B02 (B:39-120)
1c: CATH_2q08C02 (C:39-120)
1d: CATH_2q08D02 (D:39-120)
1e: CATH_2q08E02 (E:39-120)
1f: CATH_2q08F02 (F:39-120)
1g: CATH_2q08G02 (G:39-120)
1h: CATH_2q08H02 (H:39-120)
1i: CATH_2q08I02 (I:39-120)
1j: CATH_2q08J02 (J:39-120)
1k: CATH_2q08K02 (K:39-120)
1l: CATH_2q08L02 (L:39-120)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
uronate isomerase, domain 2, chain A
(11)
Homologous Superfamily
:
uronate isomerase, domain 2, chain A
(11)
Bacillus halodurans c-125. Organism_taxid: 272558. Strain: c-125, dsm18197, ferm 7344, jcm 9153.
(4)
1a
2q08A02
A:39-120
1b
2q08B02
B:39-120
1c
2q08C02
C:39-120
1d
2q08D02
D:39-120
1e
2q08E02
E:39-120
1f
2q08F02
F:39-120
1g
2q08G02
G:39-120
1h
2q08H02
H:39-120
1i
2q08I02
I:39-120
1j
2q08J02
J:39-120
1k
2q08K02
K:39-120
1l
2q08L02
L:39-120
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Asymmetric Unit 1
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Asym.Unit (843 KB)
Header - Asym.Unit
Biol.Unit 1 (218 KB)
Header - Biol.Unit 1
Biol.Unit 2 (217 KB)
Header - Biol.Unit 2
Biol.Unit 3 (217 KB)
Header - Biol.Unit 3
Biol.Unit 4 (216 KB)
Header - Biol.Unit 4
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