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2PZG
Biol. Unit 1
Info
Asym.Unit (81 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
MINIMAL HUMAN CFTR FIRST NUCLEOTIDE BINDING DOMAIN AS A MONOMER
Authors
:
S. Atwell, K. Conners, S. Emtage, T. Gheyi, N. R. Glenn, J. Hendle, H. A. L F. Lu, L. A. Rodgers, R. Romero, J. M. Sauder, D. Smith, H. Tien, S. R. Was X. Zhao
Date
:
18 May 07 (Deposition) - 09 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Nbd, Abc Transporter, Cftr, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Atwell, C. G. Brouillette, K. Conners, S. Emtage, T. Gheyi, W. B. Guggino, J. Hendle, J. F. Hunt, H. A. Lewis, F. Lu, I. I. Protasevich, L. A. Rodgers, R. Romero, S. R. Wasserman, P. C. Weber, D. Wetmore, F. F. Zhang, X. Zhao
Structures Of A Minimal Human Cftr First Nucleotide-Binding Domain As A Monomer, Head-To-Tail Homodimer, And Pathogenic Mutant.
Protein Eng. Des. Sel. V. 23 375 2010
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
GOL
1
Ligand/Ion
GLYCEROL
3
MG
-1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP A:1 , THR A:465 , GLN A:493 , HOH A:647 , HOH A:648
BINDING SITE FOR RESIDUE MG A 3
2
AC3
SOFTWARE
MG A:3 , TRP A:401 , VAL A:440 , THR A:460 , GLY A:461 , ALA A:462 , GLY A:463 , LYS A:464 , THR A:465 , SER A:466 , GLN A:493 , HOH A:647 , HOH A:648 , HOH A:667 , HOH A:692 , HOH A:754 , HOH A:765
BINDING SITE FOR RESIDUE ATP A 1
3
AC6
SOFTWARE
GLY A:551 , GLN A:552 , ARG A:555 , LEU A:578 , ASP A:579 , HOH A:702 , HOH A:715
BINDING SITE FOR RESIDUE GOL A 6
[
close Site info
]
SAPs(SNPs)/Variants
(50, 50)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_000160 (A455E, chain A, )
02: VAR_000161 (V456F, chain A, )
03: VAR_000162 (G458V, chain A, )
04: VAR_000163 (L467F, chain A, )
05: VAR_000164 (M470M, chain A, )
06: VAR_000165 (G480C, chain A, )
07: VAR_000166 (S492F, chain A, )
08: VAR_000167 (E504Q, chain A, )
09: VAR_009901 (I506M, chain A, )
10: VAR_000168 (I506V, chain A, )
11: VAR_000169 (I507V, chain A, )
12: VAR_000172 (F508C, chain A, )
13: VAR_000173 (D513G, chain A, )
14: VAR_000174 (V520F, chain A, )
15: VAR_048150 (K532E, chain A, )
16: VAR_000175 (G544V, chain A, )
17: VAR_000177 (S549I, chain A, )
18: VAR_000176 (S549N, chain A, )
19: VAR_000178 (S549R, chain A, )
20: VAR_000179 (G551D, chain A, )
21: VAR_000180 (G551S, chain A, )
22: VAR_000181 (R553Q, chain A, )
23: VAR_000182 (L558S, chain A, )
24: VAR_000183 (A559T, chain A, )
25: VAR_000184 (R560K, chain A, )
26: VAR_000185 (R560S, chain A, )
27: VAR_000186 (R560T, chain A, )
28: VAR_000187 (V562I, chain A, )
29: VAR_000188 (V562L, chain A, )
30: VAR_000189 (Y563N, chain A, )
31: VAR_000190 (Y569C, chain A, )
32: VAR_000191 (Y569D, chain A, )
33: VAR_000192 (Y569H, chain A, )
34: VAR_000193 (L571S, chain A, )
35: VAR_000194 (D572N, chain A, )
36: VAR_000195 (P574H, chain A, )
37: VAR_000196 (G576A, chain A, )
38: VAR_000197 (D579G, chain A, )
39: VAR_000198 (I601F, chain A, )
40: VAR_048151 (S605F, chain A, )
41: VAR_000199 (L610S, chain A, )
42: VAR_000200 (A613T, chain A, )
43: VAR_000201 (D614G, chain A, )
44: VAR_000202 (I618T, chain A, )
45: VAR_000203 (L619S, chain A, )
46: VAR_000204 (H620P, chain A, )
47: VAR_000205 (H620Q, chain A, )
48: VAR_000206 (G622D, chain A, )
49: VAR_000207 (G628R, chain A, )
50: VAR_000208 (L633P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_000160
A
455
E
CFTR_HUMAN
Disease (CF)
---
A
A
455
E
02
UniProt
VAR_000161
V
456
F
CFTR_HUMAN
Disease (CF)
---
A
V
456
F
03
UniProt
VAR_000162
G
458
V
CFTR_HUMAN
Disease (CF)
---
A
G
458
V
04
UniProt
VAR_000163
L
467
F
CFTR_HUMAN
Polymorphism
1800089
A
L
467
F
05
UniProt
VAR_000164
V
470
M
CFTR_HUMAN
Polymorphism
213950
A
M
470
M
06
UniProt
VAR_000165
G
480
C
CFTR_HUMAN
Disease (CF)
---
A
G
480
C
07
UniProt
VAR_000166
S
492
F
CFTR_HUMAN
Disease (CF)
---
A
S
492
F
08
UniProt
VAR_000167
E
504
Q
CFTR_HUMAN
Disease (CF)
---
A
E
504
Q
09
UniProt
VAR_009901
I
506
M
CFTR_HUMAN
Polymorphism
1800092
A
I
506
M
10
UniProt
VAR_000168
I
506
V
CFTR_HUMAN
Polymorphism
---
A
I
506
V
11
UniProt
VAR_000169
I
507
V
CFTR_HUMAN
Polymorphism
1800091
A
I
507
V
12
UniProt
VAR_000172
F
508
C
CFTR_HUMAN
Polymorphism
1800093
A
F
508
C
13
UniProt
VAR_000173
D
513
G
CFTR_HUMAN
Disease (CBAVD)
---
A
D
513
G
14
UniProt
VAR_000174
V
520
F
CFTR_HUMAN
Disease (CF)
77646904
A
V
520
F
15
UniProt
VAR_048150
K
532
E
CFTR_HUMAN
Polymorphism
35032490
A
K
532
E
16
UniProt
VAR_000175
G
544
V
CFTR_HUMAN
Disease (CBAVD)
---
A
G
544
V
17
UniProt
VAR_000177
S
549
I
CFTR_HUMAN
Disease (CF)
---
A
S
549
I
18
UniProt
VAR_000176
S
549
N
CFTR_HUMAN
Disease (CF)
---
A
S
549
N
19
UniProt
VAR_000178
S
549
R
CFTR_HUMAN
Disease (CF)
---
A
S
549
R
20
UniProt
VAR_000179
G
551
D
CFTR_HUMAN
Disease (CF)
---
A
G
551
D
21
UniProt
VAR_000180
G
551
S
CFTR_HUMAN
Disease (CF)
---
A
G
551
S
22
UniProt
VAR_000181
R
553
Q
CFTR_HUMAN
Disease (CF)
---
A
R
553
Q
23
UniProt
VAR_000182
L
558
S
CFTR_HUMAN
Disease (CF)
---
A
L
558
S
24
UniProt
VAR_000183
A
559
T
CFTR_HUMAN
Disease (CF)
---
A
A
559
T
25
UniProt
VAR_000184
R
560
K
CFTR_HUMAN
Disease (CF)
---
A
R
560
K
26
UniProt
VAR_000185
R
560
S
CFTR_HUMAN
Disease (CF)
---
A
R
560
S
27
UniProt
VAR_000186
R
560
T
CFTR_HUMAN
Disease (CF)
---
A
R
560
T
28
UniProt
VAR_000187
V
562
I
CFTR_HUMAN
Polymorphism
1800097
A
V
562
I
29
UniProt
VAR_000188
V
562
L
CFTR_HUMAN
Disease (CF)
1800097
A
V
562
L
30
UniProt
VAR_000189
Y
563
N
CFTR_HUMAN
Disease (CF)
---
A
Y
563
N
31
UniProt
VAR_000190
Y
569
C
CFTR_HUMAN
Disease (CF)
---
A
Y
569
C
32
UniProt
VAR_000191
Y
569
D
CFTR_HUMAN
Disease (CF)
---
A
Y
569
D
33
UniProt
VAR_000192
Y
569
H
CFTR_HUMAN
Disease (CF)
---
A
Y
569
H
34
UniProt
VAR_000193
L
571
S
CFTR_HUMAN
Disease (CF)
---
A
L
571
S
35
UniProt
VAR_000194
D
572
N
CFTR_HUMAN
Disease (CF)
---
A
D
572
N
36
UniProt
VAR_000195
P
574
H
CFTR_HUMAN
Disease (CF)
---
A
P
574
H
37
UniProt
VAR_000196
G
576
A
CFTR_HUMAN
Polymorphism
1800098
A
G
576
A
38
UniProt
VAR_000197
D
579
G
CFTR_HUMAN
Disease (CF)
---
A
D
579
G
39
UniProt
VAR_000198
I
601
F
CFTR_HUMAN
Disease (CF)
---
A
I
601
F
40
UniProt
VAR_048151
S
605
F
CFTR_HUMAN
Polymorphism
766874
A
S
605
F
41
UniProt
VAR_000199
L
610
S
CFTR_HUMAN
Disease (CF)
---
A
L
610
S
42
UniProt
VAR_000200
A
613
T
CFTR_HUMAN
Disease (CF)
201978662
A
A
613
T
43
UniProt
VAR_000201
D
614
G
CFTR_HUMAN
Disease (CF)
201124247
A
D
614
G
44
UniProt
VAR_000202
I
618
T
CFTR_HUMAN
Disease (CF)
---
A
I
618
T
45
UniProt
VAR_000203
L
619
S
CFTR_HUMAN
Disease (CF)
---
A
L
619
S
46
UniProt
VAR_000204
H
620
P
CFTR_HUMAN
Disease (CF)
---
A
H
620
P
47
UniProt
VAR_000205
H
620
Q
CFTR_HUMAN
Disease (CF)
---
A
H
620
Q
48
UniProt
VAR_000206
G
622
D
CFTR_HUMAN
Unclassified
---
A
G
622
D
49
UniProt
VAR_000207
G
628
R
CFTR_HUMAN
Disease (CF)
---
A
G
628
R
50
UniProt
VAR_000208
L
633
P
CFTR_HUMAN
Disease (CF)
---
A
L
633
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (A:548-562)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
CFTR_HUMAN
548-562
1
A:548-562
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2pzga_ (A:)
1b: SCOP_d2pzgb_ (B:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2pzga_
A:
1b
d2pzgb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_ABC_tran_2pzgB01 (B:465-576)
1b: PFAM_ABC_tran_2pzgB02 (B:465-576)
2a: PFAM_CFTR_R_2pzgA01 (A:639-646)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Homo sapiens (Human)
(8)
1a
ABC_tran-2pzgB01
B:465-576
1b
ABC_tran-2pzgB02
B:465-576
Clan
:
no clan defined [family: CFTR_R]
(12)
Family
:
CFTR_R
(12)
Homo sapiens (Human)
(4)
2a
CFTR_R-2pzgA01
A:639-646
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Asym.Unit (81 KB)
Header - Asym.Unit
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