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2PZD
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HTRA2/OMI PDZ DOMAIN BOUND TO A PHAGE-DERIVED LIGAND (WTMFWV)
Authors
:
B. A. Appleton, C. Wiesmann
Date
:
17 May 07 (Deposition) - 07 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Pdz Domain, Serine Protease, Apoptosis, Mitochondria, Peptide-Binding Module, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, B. A. Appleton, P. Wu, C. Wiesmann, S. S. Sidhu
Structural And Functional Analysis Of The Ligand Specificit Of The Htra2/Omi Pdz Domain.
Protein Sci. V. 16 1738 2007
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:368 , GLU A:425 , GLU B:425 , TYR B:428 , PHE B:465
BINDING SITE FOR RESIDUE EDO B 10
2
AC2
SOFTWARE
ARG A:359 , ARG A:360 , TYR A:428 , ARG A:432 , THR A:463
BINDING SITE FOR RESIDUE EDO A 11
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_027350 (G399S, chain A/B, )
2: VAR_046135 (R404W, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027350
G
399
S
HTRA2_HUMAN
Disease (PARK13)
72470545
A/B
G
399
S
2
UniProt
VAR_046135
R
404
W
HTRA2_HUMAN
Unclassified
---
A/B
R
404
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:390-445,B:390-445)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
HTRA2_HUMAN
390-445
2
A:390-445
B:390-445
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Exons
(3, 6)
Info
All Exons
Exon 1.3j (A:359-372 | B:359-372)
Exon 1.4 (A:372-404 | B:372-404)
Exon 1.5f (A:404-463 (gaps) | B:404-463 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.3i/1.3j
2: Boundary 1.3j/1.4
3: Boundary 1.4/1.5f
4: Boundary 1.5f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000258080
1a
ENSE00001276828
chr2:
74756504-74757639
1136
HTRA2_HUMAN
1-169
169
0
-
-
1.2c
ENST00000258080
2c
ENSE00000763573
chr2:
74757744-74757948
205
HTRA2_HUMAN
169-237
69
0
-
-
1.3a
ENST00000258080
3a
ENSE00000763626
chr2:
74758038-74758232
195
HTRA2_HUMAN
238-302
65
0
-
-
1.3d
ENST00000258080
3d
ENSE00001276808
chr2:
74758466-74758498
33
HTRA2_HUMAN
303-313
11
0
-
-
1.3i
ENST00000258080
3i
ENSE00000920847
chr2:
74758724-74758829
106
HTRA2_HUMAN
314-349
36
0
-
-
1.3j
ENST00000258080
3j
ENSE00001276754
chr2:
74758983-74759052
70
HTRA2_HUMAN
349-372
24
2
A:359-372
B:359-372
14
14
1.4
ENST00000258080
4
ENSE00001276734
chr2:
74759746-74759841
96
HTRA2_HUMAN
372-404
33
2
A:372-404
B:372-404
33
33
1.5f
ENST00000258080
5f
ENSE00000920849
chr2:
74759947-74760472
526
HTRA2_HUMAN
404-458
55
2
A:404-463 (gaps)
B:404-463 (gaps)
60
60
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2pzda_ (A:)
1b: SCOP_d2pzdb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2pzda_
A:
1b
d2pzdb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDZ_2_2pzdB01 (B:360-453)
1b: PFAM_PDZ_2_2pzdB02 (B:360-453)
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Clan
:
PDZ-like
(184)
Family
:
PDZ_2
(11)
Homo sapiens (Human)
(3)
1a
PDZ_2-2pzdB01
B:360-453
1b
PDZ_2-2pzdB02
B:360-453
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Asym.Unit (41 KB)
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