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2PZB
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (86 KB)
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(1)
Title
:
NAD+ SYNTHETASE FROM BACILLUS ANTHRACIS
Authors
:
H. M. Mcdonald, P. S. Pruett, C. Deivanayagam, I. I. Protasevich, W. M. C L. J. Delucas, W. J. Brouillette, C. G. Brouillette
Date
:
17 May 07 (Deposition) - 31 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nad+ Synthetase, His-Tag, Bacillus Anthracis, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. M. Mcdonald, P. S. Pruett, C. Deivanayagam, I. I. Protasevich, W. M. Carson, L. J. Delucas, W. J. Brouillette, C. G. Brouillette
Structural Adaptation Of An Interacting Non-Native C-Terminal Helical Extension Revealed In The Crystal Structure Of Nad(+) Synthetase From Bacillus Anthracis.
Acta Crystallogr. , Sect. D V. 63 891 2007
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
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No.
Name
Count
Type
Full Name
1
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:136 , ARG A:140 , HOH A:4888
BINDING SITE FOR RESIDUE SO4 A 4770
02
AC2
SOFTWARE
LYS B:136 , ARG B:140 , HOH B:4862 , HOH B:4878
BINDING SITE FOR RESIDUE SO4 B 4771
03
AC3
SOFTWARE
LYS C:136 , ARG C:140 , HOH C:4867
BINDING SITE FOR RESIDUE SO4 C 4772
04
AC4
SOFTWARE
LYS D:136 , ARG D:140 , HOH D:4852 , HOH D:4855
BINDING SITE FOR RESIDUE SO4 D 4773
05
AC5
SOFTWARE
SER A:47 , GLY A:49 , ASP A:51 , SER A:52 , THR A:158 , LYS A:171 , HOH A:4808 , HOH A:4840
BINDING SITE FOR RESIDUE SO4 A 4774
06
AC6
SOFTWARE
SER B:47 , GLY B:49 , SER B:52 , THR B:158 , LYS B:171 , HOH B:4807 , HOH B:4902
BINDING SITE FOR RESIDUE SO4 B 4775
07
AC7
SOFTWARE
SER C:47 , GLY C:49 , ASP C:51 , SER C:52 , THR C:158 , LYS C:171 , HOH C:4802
BINDING SITE FOR RESIDUE SO4 C 4776
08
AC8
SOFTWARE
SER D:47 , GLY D:49 , ASP D:51 , SER D:52 , THR D:158 , LYS D:171 , HOH D:4819
BINDING SITE FOR RESIDUE SO4 D 4777
09
AC9
SOFTWARE
THR A:128 , ASP A:129 , PHE A:130 , HIS A:279 , HIS A:283 , HOH A:4787 , HOH A:4896 , HOH A:4901
BINDING SITE FOR RESIDUE SO4 A 4778
10
BC1
SOFTWARE
THR B:128 , ASP B:129 , PHE B:130 , HIS B:279 , HIS B:283 , HOH B:4790 , HOH B:4803 , HOH B:4897
BINDING SITE FOR RESIDUE SO4 B 4779
11
BC2
SOFTWARE
THR C:128 , ASP C:129 , PHE C:130 , HIS C:279 , HIS C:283 , HOH C:4817 , HOH C:4818
BINDING SITE FOR RESIDUE SO4 C 4780
12
BC3
SOFTWARE
THR D:128 , ASP D:129 , PHE D:130 , HIS D:279 , HOH D:4808 , HOH D:4887
BINDING SITE FOR RESIDUE SO4 D 4781
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2pzba_ (A:)
1b: SCOP_d2pzbb_ (B:)
1c: SCOP_d2pzbc_ (C:)
1d: SCOP_d2pzbd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
N-type ATP pyrophosphatases
(44)
Protein domain
:
NH3-dependent NAD+-synthetase
(12)
Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
(3)
1a
d2pzba_
A:
1b
d2pzbb_
B:
1c
d2pzbc_
C:
1d
d2pzbd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2pzbC00 (C:2-283)
1b: CATH_2pzbB00 (B:1-283)
1c: CATH_2pzbA00 (A:1-283)
1d: CATH_2pzbD00 (D:1-282)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Bacillus anthracis. Organism_taxid: 1392.
(3)
1a
2pzbC00
C:2-283
1b
2pzbB00
B:1-283
1c
2pzbA00
A:1-283
1d
2pzbD00
D:1-282
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (174 KB)
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