PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2PZ1
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (69 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF AUTO-INHIBITED ASEF
Authors
:
L. Betts, J. Sondek, K. L. Rossman
Date
:
17 May 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Helical Bundle, Beta Barrel, Beta Sandwich, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Mitin, L. Betts, M. E. Yohe, C. J. Der, J. Sondek, K. L. Rossman
Release Of Autoinhibition Of Asef By Apc Leads To Cdc42 Activation And Tumor Suppression.
Nat. Struct. Mol. Biol. V. 14 814 2007
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035971 (T441R, chain A, )
2: VAR_ARHG4_HUMAN_CCDS2165_1_02 (T441R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035971
T
441
R
ARHG4_HUMAN
Unclassified
---
A
T
441
R
2
CancerSNP
VAR_ARHG4_HUMAN_CCDS2165_1_02
*
T
441
R
ARHG4_HUMAN
Disease (Breast cancer)
---
A
T
441
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:201-253)
2: DH_2 (A:284-468)
3: DH_1 (A:416-441)
4: PH_DOMAIN (A:499-606)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
ARHG4_HUMAN
201-253
1
A:201-253
2
DH_2
PS50010
Dbl homology (DH) domain profile.
ARHG4_HUMAN
284-468
1
A:284-468
3
DH_1
PS00741
Dbl homology (DH) domain signature.
ARHG4_HUMAN
416-441
1
A:416-441
4
PH_DOMAIN
PS50003
PH domain profile.
ARHG4_HUMAN
499-606
1
A:499-606
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.7 (A:181-189)
Exon 1.10 (A:190-249)
Exon 1.11c (A:250-308 (gaps))
Exon 1.12b (A:309-368)
Exon 1.13b (A:369-446)
Exon 1.13g (A:446-489)
Exon 1.14a (A:490-533)
Exon 1.15a (A:534-611)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5a/1.7
2: Boundary 1.7/1.10
3: Boundary 1.10/1.11c
4: Boundary 1.11c/1.12b
5: Boundary 1.12b/1.13b
6: Boundary 1.13b/1.13g
7: Boundary 1.13g/1.14a
8: Boundary 1.14a/1.15a
9: Boundary 1.15a/1.16a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000326016
3c
ENSE00001205109
chr2:
131674224-131674634
411
ARHG4_HUMAN
-
0
0
-
-
1.3e
ENST00000326016
3e
ENSE00001287977
chr2:
131674970-131675071
102
ARHG4_HUMAN
-
0
0
-
-
1.4a
ENST00000326016
4a
ENSE00001720558
chr2:
131688525-131688830
306
ARHG4_HUMAN
1-100
100
0
-
-
1.5a
ENST00000326016
5a
ENSE00001173924
chr2:
131704082-131704208
127
ARHG4_HUMAN
101-143
43
0
-
-
1.7
ENST00000326016
7
ENSE00001070783
chr2:
131785518-131785657
140
ARHG4_HUMAN
143-189
47
1
A:181-189
9
1.10
ENST00000326016
10
ENSE00000921654
chr2:
131796426-131796605
180
ARHG4_HUMAN
190-249
60
1
A:190-249
60
1.11c
ENST00000326016
11c
ENSE00000921655
chr2:
131797589-131797765
177
ARHG4_HUMAN
250-308
59
1
A:250-308 (gaps)
59
1.12b
ENST00000326016
12b
ENSE00000921658
chr2:
131797834-131798013
180
ARHG4_HUMAN
309-368
60
1
A:309-368
60
1.13b
ENST00000326016
13b
ENSE00000921660
chr2:
131798803-131799035
233
ARHG4_HUMAN
369-446
78
1
A:369-446
78
1.13g
ENST00000326016
13g
ENSE00000921662
chr2:
131799388-131799517
130
ARHG4_HUMAN
446-489
44
1
A:446-489
44
1.14a
ENST00000326016
14a
ENSE00000921663
chr2:
131801025-131801156
132
ARHG4_HUMAN
490-533
44
1
A:490-533
44
1.15a
ENST00000326016
15a
ENSE00000921665
chr2:
131801872-131802115
244
ARHG4_HUMAN
534-615
82
1
A:534-611
78
1.16a
ENST00000326016
16a
ENSE00000921668
chr2:
131802942-131803019
78
ARHG4_HUMAN
615-641
27
0
-
-
1.16g
ENST00000326016
16g
ENSE00001821442
chr2:
131803611-131804826
1216
ARHG4_HUMAN
641-690
50
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_PH_2pz1A01 (A:500-604)
2a: PFAM_SH3_1_2pz1A02 (A:200-245)
3a: PFAM_RhoGEF_2pz1A03 (A:288-467)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PH
(111)
Family
:
PH
(71)
Homo sapiens (Human)
(42)
1a
PH-2pz1A01
A:500-604
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
2a
SH3_1-2pz1A02
A:200-245
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Homo sapiens (Human)
(16)
3a
RhoGEF-2pz1A03
A:288-467
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (77 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2PZ1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
