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2PWZ
Biol. Unit 1
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Asym.Unit (194 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE APO FORM OF E.COLI MALATE DEHYDROGENASE
Authors
:
C. A. G. Soderberg, T. A. Clarke, D. J. Richardson, A. M. Hemmings
Date
:
14 May 07 (Deposition) - 29 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,C,E,G
Biol. Unit 1: A,C (1x)
Biol. Unit 2: E,G (1x)
Keywords
:
Apo Form Of E. Coli Malate Dehydrogenase In Space Group C2, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. G. Soderberg, T. A. Clarke, D. J. Richardson, A. M. Hemmings
The X-Ray Crystal Structure Of The Apo Form Of E. Coli Malat Dehydrogenase In Space Group C2
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(11, 22)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_MDH_ECOLI_001 (D71N, chain A/C, )
02: VAR_MDH_ECOLI_002 (A106S, chain A/C, )
03: VAR_MDH_ECOLI_003 (A209P, chain A/C, )
04: VAR_MDH_ECOLI_004 (A218R, chain A/C, )
05: VAR_MDH_ECOLI_005 (A232T, chain A/C, )
06: VAR_MDH_ECOLI_006 (V249I, chain A/C, )
07: VAR_MDH_ECOLI_007 (Q289K, chain A/C, )
08: VAR_MDH_ECOLI_008 (N290S, chain A/C, )
09: VAR_MDH_ECOLI_009 (A291S, chain A/C, )
10: VAR_MDH_ECOLI_010 (G294A, chain A/C, )
11: VAR_MDH_ECOLI_011 (D297N, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_MDH_ECOLI_001
*
D
71
N
MDH_ECOLI
---
---
A/C
D
71
N
02
UniProt
VAR_MDH_ECOLI_002
*
A
106
S
MDH_ECOLI
---
---
A/C
A
106
S
03
UniProt
VAR_MDH_ECOLI_003
*
A
209
P
MDH_ECOLI
---
---
A/C
A
209
P
04
UniProt
VAR_MDH_ECOLI_004
*
A
218
R
MDH_ECOLI
---
---
A/C
A
218
R
05
UniProt
VAR_MDH_ECOLI_005
*
A
232
T
MDH_ECOLI
---
---
A/C
A
232
T
06
UniProt
VAR_MDH_ECOLI_006
*
V
249
I
MDH_ECOLI
---
---
A/C
V
249
I
07
UniProt
VAR_MDH_ECOLI_007
*
Q
289
K
MDH_ECOLI
---
---
A/C
Q
289
K
08
UniProt
VAR_MDH_ECOLI_008
*
N
290
S
MDH_ECOLI
---
---
A/C
N
290
S
09
UniProt
VAR_MDH_ECOLI_009
*
A
291
S
MDH_ECOLI
---
---
A/C
A
291
S
10
UniProt
VAR_MDH_ECOLI_010
*
G
294
A
MDH_ECOLI
---
---
A/C
G
294
A
11
UniProt
VAR_MDH_ECOLI_011
*
D
297
N
MDH_ECOLI
---
---
A/C
D
297
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MDH (A:146-158,C:146-158)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MDH
PS00068
Malate dehydrogenase active site signature.
MDH_ECOLI
146-158
2
A:146-158
C:146-158
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2pwza2 (A:146-312)
1b: SCOP_d2pwzc2 (C:146-312)
1c: SCOP_d2pwze2 (E:146-312)
1d: SCOP_d2pwzg2 (G:146-312)
2a: SCOP_d2pwza1 (A:1-145)
2b: SCOP_d2pwzc1 (C:1-145)
2c: SCOP_d2pwze1 (E:1-145)
2d: SCOP_d2pwzg1 (G:1-145)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
automated matches
(30)
Escherichia coli K-12 [TaxId: 83333]
(2)
1a
d2pwza2
A:146-312
1b
d2pwzc2
C:146-312
1c
d2pwze2
E:146-312
1d
d2pwzg2
G:146-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Escherichia coli K-12 [TaxId: 83333]
(7)
2a
d2pwza1
A:1-145
2b
d2pwzc1
C:1-145
2c
d2pwze1
E:1-145
2d
d2pwzg1
G:1-145
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2pwzA01 (A:1-146)
1b: CATH_2pwzE01 (E:1-146)
1c: CATH_2pwzG01 (G:1-146)
1d: CATH_2pwzC01 (C:1-146)
2a: CATH_2pwzA02 (A:147-312)
2b: CATH_2pwzC02 (C:147-312)
2c: CATH_2pwzE02 (E:147-312)
2d: CATH_2pwzG02 (G:147-312)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12
(1)
1a
2pwzA01
A:1-146
1b
2pwzE01
E:1-146
1c
2pwzG01
G:1-146
1d
2pwzC01
C:1-146
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12
(1)
2a
2pwzA02
A:147-312
2b
2pwzC02
C:147-312
2c
2pwzE02
E:147-312
2d
2pwzG02
G:147-312
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ldh_1_C_2pwzG01 (G:147-310)
1b: PFAM_Ldh_1_C_2pwzG02 (G:147-310)
1c: PFAM_Ldh_1_C_2pwzG03 (G:147-310)
1d: PFAM_Ldh_1_C_2pwzG04 (G:147-310)
2a: PFAM_Ldh_1_N_2pwzG05 (G:1-145)
2b: PFAM_Ldh_1_N_2pwzG06 (G:1-145)
2c: PFAM_Ldh_1_N_2pwzG07 (G:1-145)
2d: PFAM_Ldh_1_N_2pwzG08 (G:1-145)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LDH_C
(56)
Family
:
Ldh_1_C
(51)
Escherichia coli (strain K12)
(1)
1a
Ldh_1_C-2pwzG01
G:147-310
1b
Ldh_1_C-2pwzG02
G:147-310
1c
Ldh_1_C-2pwzG03
G:147-310
1d
Ldh_1_C-2pwzG04
G:147-310
Clan
:
NADP_Rossmann
(1239)
Family
:
Ldh_1_N
(51)
Escherichia coli (strain K12)
(1)
2a
Ldh_1_N-2pwzG05
G:1-145
2b
Ldh_1_N-2pwzG06
G:1-145
2c
Ldh_1_N-2pwzG07
G:1-145
2d
Ldh_1_N-2pwzG08
G:1-145
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