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2PWF
Biol. Unit 2
Info
Asym.Unit (429 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (110 KB)
Biol.Unit 3 (111 KB)
Biol.Unit 4 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MUTB D200A MUTANT IN COMPLEX WITH GLUCOSE
Authors
:
S. Ravaud, X. Robert, R. Haser, N. Aghajari
Date
:
11 May 07 (Deposition) - 26 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Trehalulose Synthase, Sucrose Isomerase, Alpha-Amylase Family, (Beta/Alpha)8, Barrel, Enzyme Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ravaud, X. Robert, H. Watzlawick, R. Haser, R. Mattes, N. Aghajari
Trehalulose Synthase Native And Carbohydrate Complexed Structures Provide Insights Into Sucrose Isomerization.
J. Biol. Chem. V. 61 100 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASP B:61 , TYR B:64 , HIS B:104 , PHE B:145 , PHE B:164 , GLN B:168 , ARG B:198 , ALA B:200 , THR B:201 , GLU B:254 , HIS B:326 , ASP B:327 , ARG B:414 , HOH B:4034
BINDING SITE FOR RESIDUE BGC B 9999
2
AC4
SOFTWARE
ASP B:22 , ASN B:24 , ASP B:26 , ILE B:28 , ASP B:30 , HOH B:4097 , HOH B:4405
BINDING SITE FOR RESIDUE CA B 7001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2pwfa2 (A:479-557)
1b: SCOP_d2pwfb2 (B:479-557)
1c: SCOP_d2pwfc2 (C:479-557)
1d: SCOP_d2pwfd2 (D:479-557)
2a: SCOP_d2pwfa1 (A:3-478)
2b: SCOP_d2pwfb1 (B:4-478)
2c: SCOP_d2pwfc1 (C:2-478)
2d: SCOP_d2pwfd1 (D:2-478)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Pseudomonas mesoacidophila [TaxId: 265293]
(9)
1a
d2pwfa2
A:479-557
1b
d2pwfb2
B:479-557
1c
d2pwfc2
C:479-557
1d
d2pwfd2
D:479-557
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
automated matches
(71)
Pseudomonas mesoacidophila [TaxId: 265293]
(9)
2a
d2pwfa1
A:3-478
2b
d2pwfb1
B:4-478
2c
d2pwfc1
C:2-478
2d
d2pwfd1
D:2-478
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2pwfB01 (B:4-105,B:176-479)
1b: CATH_2pwfA01 (A:3-105,A:176-479)
1c: CATH_2pwfC01 (C:2-105,C:176-479)
1d: CATH_2pwfD01 (D:2-105,D:176-479)
2a: CATH_2pwfA02 (A:106-175)
2b: CATH_2pwfB02 (B:106-175)
2c: CATH_2pwfC02 (C:106-175)
2d: CATH_2pwfD02 (D:106-175)
3a: CATH_2pwfA03 (A:480-557)
3b: CATH_2pwfB03 (B:480-557)
3c: CATH_2pwfC03 (C:480-557)
3d: CATH_2pwfD03 (D:480-557)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Pseudomonas mesoacidophila. Organism_taxid: 265293. Strain: mx-45.
(5)
1a
2pwfB01
B:4-105,B:176-479
1b
2pwfA01
A:3-105,A:176-479
1c
2pwfC01
C:2-105,C:176-479
1d
2pwfD01
D:2-105,D:176-479
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Oligo-1,6-glucosidase; domain 2
(22)
Homologous Superfamily
:
Oligo-1,6-glucosidase; Domain 2
(22)
Pseudomonas mesoacidophila. Organism_taxid: 265293. Strain: mx-45.
(5)
2a
2pwfA02
A:106-175
2b
2pwfB02
B:106-175
2c
2pwfC02
C:106-175
2d
2pwfD02
D:106-175
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Pseudomonas mesoacidophila. Organism_taxid: 265293. Strain: mx-45.
(5)
3a
2pwfA03
A:480-557
3b
2pwfB03
B:480-557
3c
2pwfC03
C:480-557
3d
2pwfD03
D:480-557
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (429 KB)
Header - Asym.Unit
Biol.Unit 1 (111 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
Biol.Unit 3 (111 KB)
Header - Biol.Unit 3
Biol.Unit 4 (110 KB)
Header - Biol.Unit 4
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