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2PWF
Asym. Unit
Info
Asym.Unit (429 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (110 KB)
Biol.Unit 3 (111 KB)
Biol.Unit 4 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MUTB D200A MUTANT IN COMPLEX WITH GLUCOSE
Authors
:
S. Ravaud, X. Robert, R. Haser, N. Aghajari
Date
:
11 May 07 (Deposition) - 26 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Trehalulose Synthase, Sucrose Isomerase, Alpha-Amylase Family, (Beta/Alpha)8, Barrel, Enzyme Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ravaud, X. Robert, H. Watzlawick, R. Haser, R. Mattes, N. Aghajari
Trehalulose Synthase Native And Carbohydrate Complexed Structures Provide Insights Into Sucrose Isomerization.
J. Biol. Chem. V. 61 100 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
4
Ligand/Ion
BETA-D-GLUCOSE
2
CA
4
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:61 , TYR A:64 , HIS A:104 , PHE A:145 , PHE A:164 , GLN A:168 , ARG A:198 , ALA A:200 , THR A:201 , GLU A:254 , HIS A:326 , ASP A:327 , ARG A:414 , HOH A:4019
BINDING SITE FOR RESIDUE BGC A 9998
2
AC2
SOFTWARE
ASP A:22 , ASN A:24 , ASP A:26 , ILE A:28 , ASP A:30 , HOH A:4531 , HOH A:4715
BINDING SITE FOR RESIDUE CA A 7000
3
AC3
SOFTWARE
ASP B:61 , TYR B:64 , HIS B:104 , PHE B:145 , PHE B:164 , GLN B:168 , ARG B:198 , ALA B:200 , THR B:201 , GLU B:254 , HIS B:326 , ASP B:327 , ARG B:414 , HOH B:4034
BINDING SITE FOR RESIDUE BGC B 9999
4
AC4
SOFTWARE
ASP B:22 , ASN B:24 , ASP B:26 , ILE B:28 , ASP B:30 , HOH B:4097 , HOH B:4405
BINDING SITE FOR RESIDUE CA B 7001
5
AC5
SOFTWARE
ASP C:61 , TYR C:64 , HIS C:104 , PHE C:145 , PHE C:164 , GLN C:168 , ARG C:198 , ALA C:200 , THR C:201 , GLU C:254 , HIS C:326 , ASP C:327 , ARG C:414 , HOH C:4019
BINDING SITE FOR RESIDUE BGC C 9998
6
AC6
SOFTWARE
ASP C:22 , ASN C:24 , ASP C:26 , ILE C:28 , ASP C:30 , HOH C:4531 , HOH C:4715
BINDING SITE FOR RESIDUE CA C 7000
7
AC7
SOFTWARE
ASP D:61 , TYR D:64 , HIS D:104 , PHE D:145 , PHE D:164 , GLN D:168 , ARG D:198 , ALA D:200 , THR D:201 , GLU D:254 , HIS D:326 , ASP D:327 , ARG D:414 , HOH D:4087
BINDING SITE FOR RESIDUE BGC D 9999
8
AC8
SOFTWARE
ASP D:22 , ASN D:24 , ASP D:26 , ILE D:28 , ASP D:30 , HOH D:4259 , HOH D:4542
BINDING SITE FOR RESIDUE CA D 7001
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2pwfa2 (A:479-557)
1b: SCOP_d2pwfb2 (B:479-557)
1c: SCOP_d2pwfc2 (C:479-557)
1d: SCOP_d2pwfd2 (D:479-557)
2a: SCOP_d2pwfa1 (A:3-478)
2b: SCOP_d2pwfb1 (B:4-478)
2c: SCOP_d2pwfc1 (C:2-478)
2d: SCOP_d2pwfd1 (D:2-478)
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Classes
(
)
(
)
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Pseudomonas mesoacidophila [TaxId: 265293]
(9)
1a
d2pwfa2
A:479-557
1b
d2pwfb2
B:479-557
1c
d2pwfc2
C:479-557
1d
d2pwfd2
D:479-557
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
automated matches
(71)
Pseudomonas mesoacidophila [TaxId: 265293]
(9)
2a
d2pwfa1
A:3-478
2b
d2pwfb1
B:4-478
2c
d2pwfc1
C:2-478
2d
d2pwfd1
D:2-478
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2pwfB01 (B:4-105,B:176-479)
1b: CATH_2pwfA01 (A:3-105,A:176-479)
1c: CATH_2pwfC01 (C:2-105,C:176-479)
1d: CATH_2pwfD01 (D:2-105,D:176-479)
2a: CATH_2pwfA02 (A:106-175)
2b: CATH_2pwfB02 (B:106-175)
2c: CATH_2pwfC02 (C:106-175)
2d: CATH_2pwfD02 (D:106-175)
3a: CATH_2pwfA03 (A:480-557)
3b: CATH_2pwfB03 (B:480-557)
3c: CATH_2pwfC03 (C:480-557)
3d: CATH_2pwfD03 (D:480-557)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Pseudomonas mesoacidophila. Organism_taxid: 265293. Strain: mx-45.
(5)
1a
2pwfB01
B:4-105,B:176-479
1b
2pwfA01
A:3-105,A:176-479
1c
2pwfC01
C:2-105,C:176-479
1d
2pwfD01
D:2-105,D:176-479
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Oligo-1,6-glucosidase; domain 2
(22)
Homologous Superfamily
:
Oligo-1,6-glucosidase; Domain 2
(22)
Pseudomonas mesoacidophila. Organism_taxid: 265293. Strain: mx-45.
(5)
2a
2pwfA02
A:106-175
2b
2pwfB02
B:106-175
2c
2pwfC02
C:106-175
2d
2pwfD02
D:106-175
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Pseudomonas mesoacidophila. Organism_taxid: 265293. Strain: mx-45.
(5)
3a
2pwfA03
A:480-557
3b
2pwfB03
B:480-557
3c
2pwfC03
C:480-557
3d
2pwfD03
D:480-557
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (429 KB)
Header - Asym.Unit
Biol.Unit 1 (111 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
Biol.Unit 3 (111 KB)
Header - Biol.Unit 3
Biol.Unit 4 (110 KB)
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