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2PW9
Asym. Unit
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Asym.Unit (155 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE FORMATE DEHYDROGENASE ACCESSORY PROTEIN FROM DESULFOTALEA PSYCHROPHILA
Authors
:
J. B. Bonanno, M. Dickey, K. T. Bain, C. Logan, R. Romero, D. Smith, S. Was J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
Date
:
10 May 07 (Deposition) - 22 May 07 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
J. B. Bonanno, M. Dickey, K. T. Bain, C. Logan, R. Romero, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of A Putative Formate Dehydrogenase Accessory Protein From Desulfotalea Psychrophila.
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
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No.
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1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:154 , ARG A:173 , ARG A:200 , HOH A:603 , HOH A:618 , HOH A:657 , HIS B:154 , ARG B:173 , ARG B:200 , HOH B:270
BINDING SITE FOR RESIDUE SO4 A 601
2
AC2
SOFTWARE
HIS C:154 , ARG C:173 , ARG C:200 , HOH C:605 , HOH C:620 , HOH C:645 , HOH C:646 , HIS D:154 , ARG D:173 , ARG D:200
BINDING SITE FOR RESIDUE SO4 C 602
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2pw9a1 (A:7-257)
1b: SCOP_d2pw9b_ (B:)
1c: SCOP_d2pw9c_ (C:)
1d: SCOP_d2pw9d_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Cytidine deaminase-like
(78)
Superfamily
:
Cytidine deaminase-like
(76)
Family
:
FdhD/NarQ
(1)
Protein domain
:
Uncharacterized protein DP1777
(1)
Desulfotalea psychrophila [TaxId: 84980]
(1)
1a
d2pw9a1
A:7-257
1b
d2pw9b_
B:
1c
d2pw9c_
C:
1d
d2pw9d_
D:
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2pw9C03 (C:120-257)
1b: CATH_2pw9B03 (B:111-257)
1c: CATH_2pw9D03 (D:111-257)
1d: CATH_2pw9A03 (A:111-120,A:128-257)
2a: CATH_2pw9A02 (A:32-110)
2b: CATH_2pw9B02 (B:32-110)
2c: CATH_2pw9D02 (D:32-110)
2d: CATH_2pw9C02 (C:32-89)
3a: CATH_2pw9A01 (A:7-31)
3b: CATH_2pw9B01 (B:7-31)
3c: CATH_2pw9C01 (C:7-31)
3d: CATH_2pw9D01 (D:7-31)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Cytidine Deaminase; domain 2
(44)
Homologous Superfamily
:
Cytidine Deaminase, domain 2
(32)
Desulfotalea psychrophila lsv54. Organism_taxid: 177439. Strain: lsv54, dsm 12343.
(1)
1a
2pw9C03
C:120-257
1b
2pw9B03
B:111-257
1c
2pw9D03
D:111-257
1d
2pw9A03
A:111-120,A:128-257
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.10, no name defined]
(72)
Desulfotalea psychrophila lsv54. Organism_taxid: 177439. Strain: lsv54, dsm 12343.
(1)
2a
2pw9A02
A:32-110
2b
2pw9B02
B:32-110
2c
2pw9D02
D:32-110
2d
2pw9C02
C:32-89
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
DNA polymerase; domain 6
(10)
Desulfotalea psychrophila lsv54. Organism_taxid: 177439. Strain: lsv54, dsm 12343.
(1)
3a
2pw9A01
A:7-31
3b
2pw9B01
B:7-31
3c
2pw9C01
C:7-31
3d
2pw9D01
D:7-31
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_FdhD_NarQ_2pw9D01 (D:30-257)
1b: PFAM_FdhD_NarQ_2pw9D02 (D:30-257)
1c: PFAM_FdhD_NarQ_2pw9D03 (D:30-257)
1d: PFAM_FdhD_NarQ_2pw9D04 (D:30-257)
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Clan
:
no clan defined [family: FdhD-NarQ]
(1)
Family
:
FdhD-NarQ
(1)
Desulfotalea psychrophila
(1)
1a
FdhD-NarQ-2pw9D01
D:30-257
1b
FdhD-NarQ-2pw9D02
D:30-257
1c
FdhD-NarQ-2pw9D03
D:30-257
1d
FdhD-NarQ-2pw9D04
D:30-257
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